RosBREEDSNP_SNP_CT_14708397_Lg1_RosCOS1779_MAF40_343966_exon1, RosBREEDSNP_SNP_CT_14708397_Lg1_RosCOS1779_MAF40_343966_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_14708397_Lg1_RosCOS1779_MAF40_343966_exon1
dbSNP IDss475876751
SNP Array ID
480K SNP array for apple:AX-105218242
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_14708397_Lg1_RosCOS1779_MAF40_343966_exon1
20K SNP array for apple:RosBREEDSNP_SNP_CT_14708397_Lg1_RosCOS1779_MAF40_343966_exon1
50K SNP array for apple:AX-105218242
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_CT_14708397_Lg1_RosCOS1779_MAF40_343966_exon1.probe: GGTTCGAGGAGATTTTCAAGCGATTTTCCTTTTCTGTTCCTTGCCCTTCC
5' Flanking SequenceTTTGGGAGTTGGGTTCGAGGAGATTTTCAAGCGATTTTCCTTTTCTGTTCCTTGCCCTTC C
3' Flanking SequenceGCTTCTTTCAAAAGATCAGCTAGCCTTTTCTTCTCGTCGTCAAAATCTGGATTTGCCGTC C
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-Honeycrisp_Consensus-F11N/A15.66RosBREEDSNP_SNP_CT_14708397_Lg1_RosCOS1779_MAF40_343966_exon1View
Sequence
>RosBREEDSNP_SNP_CT_14708397_Lg1_RosCOS1779_MAF40_343966_exon1 ID=RosBREEDSNP_SNP_CT_14708397_Lg1_RosCOS1779_MAF40_343966_exon1; Name=RosBREEDSNP_SNP_CT_14708397_Lg1_RosCOS1779_MAF40_343966_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
TCAAGCGATTTTCCTTTTCTGTTCCTTGCCCTTCC[C/T]GCTTCTTTCA
AAAGATCAGCTAGCCTTTTCTTCTC
Alignments
Feature NameTypeLocationAnalysis
MDC004266.140 contig MDC004266.140:87..87. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01 chromosome Chr01:19028180..19028180. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation