RosBREEDSNP_SNP_GA_22644483_Lg13_RosCOS1496_MAF40_47204_exon1, RosBREEDSNP_SNP_GA_22644483_Lg13_RosCOS1496_MAF40_47204_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_GA_22644483_Lg13_RosCOS1496_MAF40_47204_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_GA_22644483_Lg13_RosCOS1496_MAF40_47204_exon1
50K SNP array for apple:	AX-105209692

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

GTCGCTATGATAACCGACAAGAAACGTATATTACT

3' Flanking Sequence

TCTGATATTAAGCAAAATCCAGCAGAAAATAGAT

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC029422.38	contig	MDC029422.38:609..609 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr16	chromosome	Chr16:17880101..17880101 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	16	N/A	51.87	RosBREEDSNP_SNP_GA_22644483_Lg13_RosCOS1496_MAF40_47204_exon1	View
2	Apple-M432-2013-physical-Malus-domestica	13	N/A	22644483	RosBREEDSNP_SNP_GA_22644483_Lg13_RosCOS1496_MAF40_47204_exon1	View

Sequence

>RosBREEDSNP_SNP_GA_22644483_Lg13_RosCOS1496_MAF40_47204_exon1 ID=RosBREEDSNP_SNP_GA_22644483_Lg13_RosCOS1496_MAF40_47204_exon1; Name=RosBREEDSNP_SNP_GA_22644483_Lg13_RosCOS1496_MAF40_47204_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
GTCGCTATGATAACCGACAAGAAACGTATATTACTRTCTGATATTAAGCA
AAATCCAGCAGAAAATAGAT