RosBREEDSNP_SNP_TC_10411650_Lg15_00543_MAF50_MDP0000144056_exon1, RosBREEDSNP_SNP_TC_10411650_Lg15_00543_MAF50_MDP0000144056_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_TC_10411650_Lg15_00543_MAF50_MDP0000144056_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_TC_10411650_Lg15_00543_MAF50_MDP0000144056_exon1
50K SNP array for apple:	AX-105201147

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

TGCGAGTCAACAGGATTTACTAAGGGTTGTAGATG

3' Flanking Sequence

TGACCAACCCTGGTTCTTCAAAGGTGACCTGGTG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC032152.6	contig	MDC032152.6:1685..1685 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr12	chromosome	Chr12:16163493..16163493 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr12	chromosome	Chr12:16163491..16163491 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	4	N/A	23	RosBREEDSNP_SNP_TC_10411650_Lg15_00543_MAF50_MDP0000144056_exon1	View
2	Apple-M432-2013-physical-Malus-domestica	15	N/A	10411650	RosBREEDSNP_SNP_TC_10411650_Lg15_00543_MAF50_MDP0000144056_exon1	View

Sequence

>RosBREEDSNP_SNP_TC_10411650_Lg15_00543_MAF50_MDP0000144056_exon1 ID=RosBREEDSNP_SNP_TC_10411650_Lg15_00543_MAF50_MDP0000144056_exon1; Name=RosBREEDSNP_SNP_TC_10411650_Lg15_00543_MAF50_MDP0000144056_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
TGCGAGTCAACAGGATTTACTAAGGGTTGTAGATGYTGACCAACCCTGGT
TCTTCAAAGGTGACCTGGTG