RosBREEDSNP_SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1, RosBREEDSNP_SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1
Aliasss475875759
rs267608710
b475875759
SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1
AX-105184293
dbSNP IDss475875759
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1
50K SNP array for apple:RosBREEDSNP_SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1
TypeSNP
SNP AllelesT/C
5' Flanking SequenceACTCTTCCTGCTTTGTTTTCATAGTTTCCTGCTCA
3' Flanking SequenceCAGATTCGGAGATGCATCCAAGTTCATATCTTTGC
SpeciesMalus x domestica
PolymorphismP_ RosBREEDSNP_SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1RosBREEDSNP_SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1Malus x domesticamarker_locus
RosBREEDSNP_SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1RosBREEDSNP_SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1-101.27Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1 ID=RosBREEDSNP_SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1|Name=RosBREEDSNP_SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1|organism=Malus x domestica|type=genetic_marker|length=71bp
ACTCTTCCTGCTTTGTTTTCATAGTTTCCTGCTCAYCAGATTCGGAGATG
CATCCAAGTTCATATCTTTGC
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20131N/A54.45RosBREEDSNP_SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1View
2Apple-M432-2013-physical-Malus-domestica1N/A28113428RosBREEDSNP_SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1View
3Pear-PH-CG-2017LG7N/A101.27RosBREEDSNP_SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC019281.474 contig MDC019281.474:301..301. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr07 chromosome Chr07:5191733..5191733. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr07 chromosome Chr07:5191732..5191732. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation