RosBREEDSNP_SNP_AG_8106644_Lg4_64651_MAF20_64651_exon1, RosBREEDSNP_SNP_AG_8106644_Lg4_64651_MAF20_64651_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AG_8106644_Lg4_64651_MAF20_64651_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_AG_8106644_Lg4_64651_MAF20_64651_exon1
50K SNP array for apple:	AX-105202089

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

GGGTTGTAATGCCTCCGGTGGTCTTAGCCGAAAGC

3' Flanking Sequence

TGCGGTAGCTTTCAGCCAAGGGGCTCTGTAATGT

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC016941.188	contig	MDC016941.188:19462..19462 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr16	chromosome	Chr16:9486472..9486472 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr16	chromosome	Chr16:9486470..9486470 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2012	Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-MM-F1	16	N/A	32	b475875919	View
2	Apple-Honeycrisp_Consensus-F1	16	N/A	28.41	RosBREEDSNP_SNP_AG_8106644_Lg4_64651_MAF20_64651_exon1	View
3	Apple-BB-F1	16	N/A	31.73	RosBREEDSNP_SNP_AG_8106644_Lg4_64651_MAF20_64651_exon1	View
4	Apple-NC-F1	16	N/A	45.91	RosBREEDSNP_SNP_AG_8106644_Lg4_64651_MAF20_64651_exon1	View
5	Apple-NCZFBB-consensus	16	N/A	38.65	RosBREEDSNP_SNP_AG_8106644_Lg4_64651_MAF20_64651_exon1	View
6	Apple-ZF-F1	16	N/A	35.45	RosBREEDSNP_SNP_AG_8106644_Lg4_64651_MAF20_64651_exon1	View

Sequence

>RosBREEDSNP_SNP_AG_8106644_Lg4_64651_MAF20_64651_exon1 ID=RosBREEDSNP_SNP_AG_8106644_Lg4_64651_MAF20_64651_exon1; Name=RosBREEDSNP_SNP_AG_8106644_Lg4_64651_MAF20_64651_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
GGGTTGTAATGCCTCCGGTGGTCTTAGCCGAAAGCRTGCGGTAGCTTTCA
GCCAAGGGGCTCTGTAATGT