RosBREEDSNP_SNP_CT_1007904_Lg3_00506_MAF10_1684362_exon3, RosBREEDSNP_SNP_CT_1007904_Lg3_00506_MAF10_1684362_exon3 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_CT_1007904_Lg3_00506_MAF10_1684362_exon3

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_CT_1007904_Lg3_00506_MAF10_1684362_exon3
50K SNP array for apple:	AX-105201317

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

TCTCTAGGAGGAGAGGGGGGAAGAGCCCCACTGAA

3' Flanking Sequence

TTGCCTCTCCAATCTACCTGACCGCCAGCATACT

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC005627.323	contig	MDC005627.323:19029..19029 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr03	chromosome	Chr03:450584..450584 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr11	chromosome	Chr11:707874..707874 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2012	Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-MM-F1	11	N/A	0.8	a475877478	View
2	Apple-Honeycrisp_Consensus-F1	11	N/A	0.91	RosBREEDSNP_SNP_CT_1007904_Lg3_00506_MAF10_1684362_exon3	View

Sequence

>RosBREEDSNP_SNP_CT_1007904_Lg3_00506_MAF10_1684362_exon3 ID=RosBREEDSNP_SNP_CT_1007904_Lg3_00506_MAF10_1684362_exon3; Name=RosBREEDSNP_SNP_CT_1007904_Lg3_00506_MAF10_1684362_exon3; organism=Malus x domestica; type=genetic_marker; length=70bp
TCTCTAGGAGGAGAGGGGGGAAGAGCCCCACTGAAYTTGCCTCTCCAATC
TACCTGACCGCCAGCATACT