RosBREEDSNP_SNP_AG_23395001_Lg4_01567_MAF40_488642_exon1, RosBREEDSNP_SNP_AG_23395001_Lg4_01567_MAF40_488642_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AG_23395001_Lg4_01567_MAF40_488642_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_AG_23395001_Lg4_01567_MAF40_488642_exon1
50K SNP array for apple:	AX-105201391

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

CCCTGGTATTACTCCTCTCTATGAGATGTGGGATC

3' Flanking Sequence

ATCCGCCCTTCCTGTTTCTACATCTTTTTGGATG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC005039.143	contig	MDC005039.143:17675..17675 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr04	chromosome	Chr04:30057560..30057560 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	4	N/A	62.05	RosBREEDSNP_SNP_AG_23395001_Lg4_01567_MAF40_488642_exon1	View
2	Apple-M432-2013-physical-Malus-domestica	4	N/A	23395001	RosBREEDSNP_SNP_AG_23395001_Lg4_01567_MAF40_488642_exon1	View

Sequence

>RosBREEDSNP_SNP_AG_23395001_Lg4_01567_MAF40_488642_exon1 ID=RosBREEDSNP_SNP_AG_23395001_Lg4_01567_MAF40_488642_exon1; Name=RosBREEDSNP_SNP_AG_23395001_Lg4_01567_MAF40_488642_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
CCCTGGTATTACTCCTCTCTATGAGATGTGGGATCRATCCGCCCTTCCTG
TTTCTACATCTTTTTGGATG