RosBREEDSNP_SNP_AG_607115_Lg13_01579_MAF20_MDP0000269671_exon5, RosBREEDSNP_SNP_AG_607115_Lg13_01579_MAF20_MDP0000269671_exon5 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AG_607115_Lg13_01579_MAF20_MDP0000269671_exon5

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_AG_607115_Lg13_01579_MAF20_MDP0000269671_exon5
50K SNP array for apple:	AX-105223283

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

CGAAGTTCCGAATCGCATCGAGGAAGGCAGGGTCG

3' Flanking Sequence

GATTCCTAATCTTATTGAGCATATCGGGGTCGAGT

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC001747.427	contig	MDC001747.427:14205..14205 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr02	chromosome	Chr02:34089598..34089598 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr13	chromosome	Chr13:714056..714056 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	14	N/A	33.57	RosBREEDSNP_SNP_AG_607115_Lg13_01579_MAF20_MDP0000269671_exon5	View
2	Apple-M432-2013-physical-Malus-domestica	13	N/A	607115	RosBREEDSNP_SNP_AG_607115_Lg13_01579_MAF20_MDP0000269671_exon5	View

Sequence

>RosBREEDSNP_SNP_AG_607115_Lg13_01579_MAF20_MDP0000269671_exon5 ID=RosBREEDSNP_SNP_AG_607115_Lg13_01579_MAF20_MDP0000269671_exon5; Name=RosBREEDSNP_SNP_AG_607115_Lg13_01579_MAF20_MDP0000269671_exon5; organism=Malus x domestica; type=genetic_marker; length=71bp
CGAAGTTCCGAATCGCATCGAGGAAGGCAGGGTCGRGATTCCTAATCTTA
TTGAGCATATCGGGGTCGAGT