RosBREEDSNP_SNP_CT_3753597_Lg2_127385__127385_exon2, RosBREEDSNP_SNP_CT_3753597_Lg2_127385__127385_exon2 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_CT_3753597_Lg2_127385__127385_exon2

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_CT_3753597_Lg2_127385__127385_exon2
50K SNP array for apple:	AX-105223904

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

AAATTACTTACCCTCCCATCCATCTCATTGATGGC

3' Flanking Sequence

AGAATCGCTGACCGGGGATTCCTGAAAGTGACAAA

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC013953.342	contig	MDC013953.342:6655..6655 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr02	chromosome	Chr02:3226482..3226482 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-Honeycrisp_Consensus-F1	2	N/A	6.38	RosBREEDSNP_SNP_CT_3753597_Lg2_127385__127385_exon2	View

Sequence

>RosBREEDSNP_SNP_CT_3753597_Lg2_127385__127385_exon2 ID=RosBREEDSNP_SNP_CT_3753597_Lg2_127385__127385_exon2; Name=RosBREEDSNP_SNP_CT_3753597_Lg2_127385__127385_exon2; organism=Malus x domestica; type=genetic_marker; length=71bp
AAATTACTTACCCTCCCATCCATCTCATTGATGGCRAGAATCGCTGACCG
GGGATTCCTGAAAGTGACAAA