RosBREEDSNP_SNP_TC_6697023_Lg16_01173_MAF50_728139_exon1, RosBREEDSNP_SNP_TC_6697023_Lg16_01173_MAF50_728139_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_TC_6697023_Lg16_01173_MAF50_728139_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:

RosBREEDSNP_SNP_TC_6697023_Lg16_01173_MAF50_728139_exon1

Type

SNP

SNP Alleles

T/C

Species

Publication

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	4	N/A	28.01	RosBREEDSNP_SNP_TC_6697023_Lg16_01173_MAF50_728139_exon1	View
2	Apple-M432-2013-physical-Malus-domestica	16	N/A	6697023	RosBREEDSNP_SNP_TC_6697023_Lg16_01173_MAF50_728139_exon1	View

Alignments

Feature Name	Type	Location	Analysis
MDC009329.250	contig	MDC009329.250:912..912.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr16	chromosome	Chr16:8970312..8970312.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation