RosBREEDSNP_SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1, RosBREEDSNP_SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1
Aliasss475877046
rs267609993
c475877046
SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1
R_4335862_L2_PA
AX-105192124
dbSNP IDss475877046
SNP Array ID
480K SNP array for apple:RosBREEDSNP_SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1
20K SNP array for apple:RosBREEDSNP_SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1
50K SNP array for apple:RosBREEDSNP_SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1
TypeSNP
SNP AllelesA/G
Probe 1RosBREEDSNP_SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1.probe: TCCCTTTGTATTTGTTCTTGCTGTGGTTTGGCTTGATCCGAGAAGGACCA
5' Flanking SequenceCCTAAGGGTCATTCGACTGATACTCCTTATGGTGGTTCTTCACAGTCTACATTTTTTTCC T
3' Flanking SequenceTGGTCCTTCTCGGATCAAGCCAAACCACAGCAAGAACAAATACAAAGGGAAATTTCAGTA C
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Relationships

The following probe feature(s) are associated with this genetic_marker:

Feature NameUnique NameSpeciesType
probeRosBREEDSNP_SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1.probeMalus x domesticaprobe


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1RosBREEDSNP_SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1 ID=RosBREEDSNP_SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1|Name=RosBREEDSNP_SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1|organism=Malus x domestica|type=genetic_marker|length=75bp
TTATGGTGGTTCTTCACAGTCTACATTTTTTTCCT[C/T]TGGTCCTTCT
CGGATCAAGCCAAACCACAGCAAGA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20132N/A10.24RosBREEDSNP_SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1View
2Apple-M432-2013-physical-Malus-domestica2N/A4335862RosBREEDSNP_SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC006388.285 contig MDC006388.285:6848..6848. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr02 chromosome Chr02:3789305..3789305- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr02 chromosome Chr02:3789306..3789306. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation