RosBREEDSNP_SNP_AG_1319830_Lg10_RosCOS2296_MAF40_MDP0000686421_exon2, RosBREEDSNP_SNP_AG_1319830_Lg10_RosCOS2296_MAF40_MDP0000686421_exon2 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AG_1319830_Lg10_RosCOS2296_MAF40_MDP0000686421_exon2

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_AG_1319830_Lg10_RosCOS2296_MAF40_MDP0000686421_exon2
50K SNP array for apple:	AX-105219757

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

TAGTGATTGATTTTCACGTTGTTGAACTTCAACTT

3' Flanking Sequence

AGGTGGTCGAGGAGGTGGAGGTGGATGTGGCATT

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC010918.131	contig	MDC010918.131:3378..3378 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr10	chromosome	Chr10:1619093..1619093 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2012	Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-MM-F1	15	N/A	81.6	a475879605	View

Sequence

>RosBREEDSNP_SNP_AG_1319830_Lg10_RosCOS2296_MAF40_MDP0000686421_exon2 ID=RosBREEDSNP_SNP_AG_1319830_Lg10_RosCOS2296_MAF40_MDP0000686421_exon2; Name=RosBREEDSNP_SNP_AG_1319830_Lg10_RosCOS2296_MAF40_MDP0000686421_exon2; organism=Malus x domestica; type=genetic_marker; length=70bp
TAGTGATTGATTTTCACGTTGTTGAACTTCAACTTRAGGTGGTCGAGGAG
GTGGAGGTGGATGTGGCATT