RosBREEDSNP_SNP_TC_26252739_Lg13_02452_MAF30_MDP0000212353_exon6, RosBREEDSNP_SNP_TC_26252739_Lg13_02452_MAF30_MDP0000212353_exon6 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_TC_26252739_Lg13_02452_MAF30_MDP0000212353_exon6

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_TC_26252739_Lg13_02452_MAF30_MDP0000212353_exon6
50K SNP array for apple:	AX-105191255

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

AAAAATTTCACCTAAATTATTCATTTCAATAACTG

3' Flanking Sequence

TTTATCCCAACCTTCCGGATAACAGCTACAATAT

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC004449.255	contig	MDC004449.255:879..879 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr00	chromosome	Chr00:14590354..14590354 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	11	N/A	44.1	RosBREEDSNP_SNP_TC_26252739_Lg13_02452_MAF30_MDP0000212353_exon6	View
2	Apple-M432-2013-physical-Malus-domestica	13	N/A	26252739	RosBREEDSNP_SNP_TC_26252739_Lg13_02452_MAF30_MDP0000212353_exon6	View

Sequence

>RosBREEDSNP_SNP_TC_26252739_Lg13_02452_MAF30_MDP0000212353_exon6 ID=RosBREEDSNP_SNP_TC_26252739_Lg13_02452_MAF30_MDP0000212353_exon6; Name=RosBREEDSNP_SNP_TC_26252739_Lg13_02452_MAF30_MDP0000212353_exon6; organism=Malus x domestica; type=genetic_marker; length=70bp
AAAAATTTCACCTAAATTATTCATTTCAATAACTGYTTTATCCCAACCTT
CCGGATAACAGCTACAATAT