RosBREEDSNP_SNP_AG_33380281_Lg3_285981_MAF50_285981_exon6, RosBREEDSNP_SNP_AG_33380281_Lg3_285981_MAF50_285981_exon6 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AG_33380281_Lg3_285981_MAF50_285981_exon6

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_AG_33380281_Lg3_285981_MAF50_285981_exon6
50K SNP array for apple:	AX-105207431

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

ATTCCATTGGAATCGTTGCAATTTCTCACGGTTGC

3' Flanking Sequence

CTGGTGTGGCAGCACGTGCATGCGGCCTTGTAGG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC011796.280	contig	MDC011796.280:37342..37342 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr15	chromosome	Chr15:6409427..6409427 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr15	chromosome	Chr15:6409425..6409425 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	15	N/A	23.37	RosBREEDSNP_SNP_AG_33380281_Lg3_285981_MAF50_285981_exon6	View
2	Apple-M432-2013-physical-Malus-domestica	3	N/A	33380281	RosBREEDSNP_SNP_AG_33380281_Lg3_285981_MAF50_285981_exon6	View

Sequence

>RosBREEDSNP_SNP_AG_33380281_Lg3_285981_MAF50_285981_exon6 ID=RosBREEDSNP_SNP_AG_33380281_Lg3_285981_MAF50_285981_exon6; Name=RosBREEDSNP_SNP_AG_33380281_Lg3_285981_MAF50_285981_exon6; organism=Malus x domestica; type=genetic_marker; length=70bp
ATTCCATTGGAATCGTTGCAATTTCTCACGGTTGCRCTGGTGTGGCAGCA
CGTGCATGCGGCCTTGTAGG