RosBREEDSNP_SNP_TG_18569842_Lg5_00323_MAF10_770826_exon1, RosBREEDSNP_SNP_TG_18569842_Lg5_00323_MAF10_770826_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_TG_18569842_Lg5_00323_MAF10_770826_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_TG_18569842_Lg5_00323_MAF10_770826_exon1
50K SNP array for apple:	AX-105206459

Type

SNP

SNP Alleles

T/G

5' Flanking Sequence

GCATTTGATGCTTGCTGGAAGGGTAACAAAATTGT

3' Flanking Sequence

TCCACAAAGATTTAACTTTCGTAAAGAGGACAAG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC016977.116	contig	MDC016977.116:3670..3670 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr10	chromosome	Chr10:2568166..2568166 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr10	chromosome	Chr10:2568164..2568164 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple_HCGA_F1	10	N/A	59.59	SNP_TG_18569842_Lg5_00323_MAF10_770826_exon1	View
2	Apple_HC64_F1	10	N/A	85.88	SNP_TG_18569842_Lg5_00323_MAF10_770826_exon1	View
3	Apple_HCMO_F1	10	N/A	7.7	SNP_TG_18569842_Lg5_00323_MAF10_770826_exon1	View
4	Apple_HGMM_Consenus	10	N/A	5.93	SNP_TG_18569842_Lg5_00323_MAF10_770826_exon1	View

Sequence

>RosBREEDSNP_SNP_TG_18569842_Lg5_00323_MAF10_770826_exon1 ID=RosBREEDSNP_SNP_TG_18569842_Lg5_00323_MAF10_770826_exon1; Name=RosBREEDSNP_SNP_TG_18569842_Lg5_00323_MAF10_770826_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
GCATTTGATGCTTGCTGGAAGGGTAACAAAATTGTKTCCACAAAGATTTA
ACTTTCGTAAAGAGGACAAG