RosBREEDSNP_SNP_CT_16660949_Lg13_00890_MAF30_MDP0000285581_exon1, RosBREEDSNP_SNP_CT_16660949_Lg13_00890_MAF30_MDP0000285581_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_CT_16660949_Lg13_00890_MAF30_MDP0000285581_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_CT_16660949_Lg13_00890_MAF30_MDP0000285581_exon1
50K SNP array for apple:	AX-105219037

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

TGCCAAAGTTTTCATGTCGAGGATCACTGGAGTTA

3' Flanking Sequence

TACTGCCCAAGTTTGTCGTCAGGCTAATGATTTG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-Honeycrisp_Consensus-F1	1	N/A	0	RosBREEDSNP_SNP_CT_16660949_Lg13_00890_MAF30_MDP0000285581_exon1	View

Sequence

>RosBREEDSNP_SNP_CT_16660949_Lg13_00890_MAF30_MDP0000285581_exon1 ID=RosBREEDSNP_SNP_CT_16660949_Lg13_00890_MAF30_MDP0000285581_exon1; Name=RosBREEDSNP_SNP_CT_16660949_Lg13_00890_MAF30_MDP0000285581_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
TGCCAAAGTTTTCATGTCGAGGATCACTGGAGTTAYTACTGCCCAAGTTT
GTCGTCAGGCTAATGATTTG

Alignments

Feature Name	Type	Location	Analysis
MDC010913.575	contig	MDC010913.575:8579..8579.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01	chromosome	Chr01:14265351..14265351.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation