RosBREEDSNP_SNP_CT_16037279_Lg14_20974__20974_exon1, RosBREEDSNP_SNP_CT_16037279_Lg14_20974__20974_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_CT_16037279_Lg14_20974__20974_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_CT_16037279_Lg14_20974__20974_exon1
50K SNP array for apple:	AX-105177151

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

AATCAAGCCATATATTCTGGCGACCTCAGTCTCGG

3' Flanking Sequence

GAAGCTGATAAACCGCGAGTTTGAGCTACAAAAAT

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC007283.1038	contig	MDC007283.1038:23157..23157 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr14	chromosome	Chr14:10326071..10326071 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	14	N/A	22.82	RosBREEDSNP_SNP_CT_16037279_Lg14_20974__20974_exon1	View
2	Apple-M432-2013-physical-Malus-domestica	14	N/A	16037279	RosBREEDSNP_SNP_CT_16037279_Lg14_20974__20974_exon1	View

Sequence

>RosBREEDSNP_SNP_CT_16037279_Lg14_20974__20974_exon1 ID=RosBREEDSNP_SNP_CT_16037279_Lg14_20974__20974_exon1; Name=RosBREEDSNP_SNP_CT_16037279_Lg14_20974__20974_exon1; organism=Malus x domestica; type=genetic_marker; length=71bp
AATCAAGCCATATATTCTGGCGACCTCAGTCTCGGRGAAGCTGATAAACC
GCGAGTTTGAGCTACAAAAAT