RosBREEDSNP_SNP_CT_24483289_Lg3_RosCOS430_MAF10_MDP0000425359_exon1, RosBREEDSNP_SNP_CT_24483289_Lg3_RosCOS430_MAF10_MDP0000425359_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_24483289_Lg3_RosCOS430_MAF10_MDP0000425359_exon1
Aliasss475877696
rs267610642
c475877696
SNP_CT_24483289_Lg3_RosCOS430_MAF10_MDP0000425359_exon1
AX-105213695
dbSNP IDss475877696
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_24483289_Lg3_RosCOS430_MAF10_MDP0000425359_exon1
50K SNP array for apple:RosBREEDSNP_SNP_CT_24483289_Lg3_RosCOS430_MAF10_MDP0000425359_exon1
TypeSNP
SNP AllelesT/C
5' Flanking SequenceGGAAAGACATTAGTAACAATAAATGGCCCAATCCA
3' Flanking SequenceTTGGAACGTAACTTACCGGGGAATAACCGAAGGC
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_CT_24483289_Lg3_RosCOS430_MAF10_MDP0000425359_exon1RosBREEDSNP_SNP_CT_24483289_Lg3_RosCOS430_MAF10_MDP0000425359_exon1Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_CT_24483289_Lg3_RosCOS430_MAF10_MDP0000425359_exon1 ID=RosBREEDSNP_SNP_CT_24483289_Lg3_RosCOS430_MAF10_MDP0000425359_exon1|Name=RosBREEDSNP_SNP_CT_24483289_Lg3_RosCOS430_MAF10_MDP0000425359_exon1|organism=Malus x domestica|type=genetic_marker|length=70bp
GGAAAGACATTAGTAACAATAAATGGCCCAATCCAYTTGGAACGTAACTT
ACCGGGGAATAACCGAAGGC
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20133N/A46.2RosBREEDSNP_SNP_CT_24483289_Lg3_RosCOS430_MAF10_MDP0000425359_exon1View
2Apple-M432-2013-physical-Malus-domestica3N/A24483289RosBREEDSNP_SNP_CT_24483289_Lg3_RosCOS430_MAF10_MDP0000425359_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC005655.284 contig MDC005655.284:22623..22623. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr00 chromosome Chr00:16732856..16732856. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr01 chromosome Chr01:12300893..12300893. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr02 chromosome Chr02:33031815..33031815. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr08 chromosome Chr08:15198566..15198566. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr10 chromosome Chr10:29903274..29903274. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr11 chromosome Chr11:28206757..28206757. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr16 chromosome Chr16:27374642..27374642. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation