RosBREEDSNP_SNP_GT_17323011_Lg12_01607_MAF30_MDP0000800684_exon9, RosBREEDSNP_SNP_GT_17323011_Lg12_01607_MAF30_MDP0000800684_exon9 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_GT_17323011_Lg12_01607_MAF30_MDP0000800684_exon9

dbSNP ID

SNP Array ID

480K SNP array for apple:	AX-105201583
IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_GT_17323011_Lg12_01607_MAF30_MDP0000800684_exon9
50K SNP array for apple:	AX-105201583

Type

SNP

SNP Alleles

5' Flanking Sequence

GGCATCCATTATGGCCACATTTTGATCCATTTCAA

3' Flanking Sequence

GTTACCCGTCTCTCTAAACTCGCAGATTACTGCA

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
480K SNP array for apple	SNP_chip
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC019092.244	contig	MDC019092.244:19874..19874 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr04	chromosome	Chr04:16142557..16142557 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2016	Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple_HCGA_F1	12	N/A	32.91	SNP_GT_17323011_Lg12_01607_MAF30_MDP0000800684_exon9	View
2	Apple_HC64_F1	12	N/A	33.2	SNP_GT_17323011_Lg12_01607_MAF30_MDP0000800684_exon9	View
3	Apple_HCMO_F1	12	N/A	29.67	SNP_GT_17323011_Lg12_01607_MAF30_MDP0000800684_exon9	View
4	Apple_HGMM_Consenus	12	N/A	35.46	SNP_GT_17323011_Lg12_01607_MAF30_MDP0000800684_exon9	View

Sequence

>RosBREEDSNP_SNP_GT_17323011_Lg12_01607_MAF30_MDP0000800684_exon9 ID=RosBREEDSNP_SNP_GT_17323011_Lg12_01607_MAF30_MDP0000800684_exon9; Name=RosBREEDSNP_SNP_GT_17323011_Lg12_01607_MAF30_MDP0000800684_exon9; organism=Malus x domestica; type=genetic_marker; length=75bp
GGCATCCATTATGGCCACATTTTGATCCATTTCAA[G/T]GTTACCCGTC
TCTCTAAACTCGCAGATTACTGCAG