RosBREEDSNP_SNP_TC_8606832_Lg10_RosCOS1766_MAF30_158573_exon2, RosBREEDSNP_SNP_TC_8606832_Lg10_RosCOS1766_MAF30_158573_exon2 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_TC_8606832_Lg10_RosCOS1766_MAF30_158573_exon2

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_TC_8606832_Lg10_RosCOS1766_MAF30_158573_exon2
50K SNP array for apple:	AX-105200359

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

GTCCACCCTTTGGATGATGGATTCCTTGTTATCTC

3' Flanking Sequence

AGCAGAGAGTCCCTCACATGATCAGCTTGAACTA

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC006895.954	contig	MDC006895.954:13412..13412 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr10	chromosome	Chr10:20568334..20568334 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr10	chromosome	Chr10:20568332..20568332 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	5	N/A	52.5	RosBREEDSNP_SNP_TC_8606832_Lg10_RosCOS1766_MAF30_158573_exon2	View
2	Apple-M432-2013-physical-Malus-domestica	10	N/A	8606832	RosBREEDSNP_SNP_TC_8606832_Lg10_RosCOS1766_MAF30_158573_exon2	View

Sequence

>RosBREEDSNP_SNP_TC_8606832_Lg10_RosCOS1766_MAF30_158573_exon2 ID=RosBREEDSNP_SNP_TC_8606832_Lg10_RosCOS1766_MAF30_158573_exon2; Name=RosBREEDSNP_SNP_TC_8606832_Lg10_RosCOS1766_MAF30_158573_exon2; organism=Malus x domestica; type=genetic_marker; length=70bp
GTCCACCCTTTGGATGATGGATTCCTTGTTATCTCYAGCAGAGAGTCCCT
CACATGATCAGCTTGAACTA