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Marker Overview
| Name | RosBREEDSNP_SNP_CT_11711211_Lg5_RosCOS544_MAF20_378820_exon2 |
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| dbSNP ID | ss475883108 |
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| SNP Array ID | | IRSC 9K SNP array for apple: | RosBREEDSNP_SNP_CT_11711211_Lg5_RosCOS544_MAF20_378820_exon2 | | 50K SNP array for apple: | AX-105194191 |
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| Type | SNP |
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| SNP Alleles | T/C |
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| 5' Flanking Sequence | CGAAATGTTTTGTTCATCTATTTCTTCGGTAATTT |
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| 3' Flanking Sequence | AGTTTCCCTTAAATCCATATAAACAAAAGAGAGAT |
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| Species | Malus x domestica |
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| Publication | [view all] |
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Analyses
This genetic_marker is derived from or has results from the following analyses
Publications
| Year | Publication |
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| 2012 | Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C. Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PloS one. 2012; 7(2):e31745. |
| 2020 | Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8 |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Pear-PM-F1-PEAR3 | 17 | N/A | 41.99 | RosBREED_SNP_CT_11711211_Lg5_RosCOS544_MAF20_378820_exon2 | View |
| 2 | Pear-PH-CG-2017 | LG17 | N/A | 83.67 | RosBREEDSNP_SNP_CT_11711211_Lg5_RosCOS544_MAF20_378820_exon2 | View |
Sequence
>RosBREEDSNP_SNP_CT_11711211_Lg5_RosCOS544_MAF20_378820_exon2 ID=RosBREEDSNP_SNP_CT_11711211_Lg5_RosCOS544_MAF20_378820_exon2; Name=RosBREEDSNP_SNP_CT_11711211_Lg5_RosCOS544_MAF20_378820_exon2; organism=Malus x domestica; type=genetic_marker; length=71bp
CGAAATGTTTTGTTCATCTATTTCTTCGGTAATTTYAGTTTCCCTTAAAT
CCATATAAACAAAAGAGAGAT
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