RosBREEDSNP_SNP_AG_3730213_Lg9_00605_MAF50_MDP0000205248_exon4, RosBREEDSNP_SNP_AG_3730213_Lg9_00605_MAF50_MDP0000205248_exon4 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_AG_3730213_Lg9_00605_MAF50_MDP0000205248_exon4
dbSNP IDss475879304
SNP Array ID
480K SNP array for apple:AX-115182309
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_AG_3730213_Lg9_00605_MAF50_MDP0000205248_exon4
20K SNP array for apple:RosBREEDSNP_SNP_AG_3730213_Lg9_00605_MAF50_MDP0000205248_exon4
50K SNP array for apple:AX-105203673
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_AG_3730213_Lg9_00605_MAF50_MDP0000205248_exon4.probe: AGAGAAATATCCACAAGTTCCTCCATGCAGATATTCATTCGGAGGAACAT
5' Flanking SequenceCCACCAGGGGAACCATTCAAGTTTGGGTCACCGGGTGGATGTGTCTGCAATTGATGTCAA C
3' Flanking SequenceATGTTCCTCCGAATGAATATCTGCATGGAGGAACTTGTGGATATTTCTCTTTAGGGGCTA A
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20139N/A15.74RosBREEDSNP_SNP_AG_3730213_Lg9_00605_MAF50_MDP0000205248_exon4View
2Apple-M432-2013-physical-Malus-domestica9N/A3730213RosBREEDSNP_SNP_AG_3730213_Lg9_00605_MAF50_MDP0000205248_exon4View
3Pear-PH-CG-2017LG9N/A28.06RosBREEDSNP_SNP_AG_3730213_Lg9_00605_MAF50_MDP0000205248_exon4View
Sequence
>RosBREEDSNP_SNP_AG_3730213_Lg9_00605_MAF50_MDP0000205248_exon4 ID=RosBREEDSNP_SNP_AG_3730213_Lg9_00605_MAF50_MDP0000205248_exon4; Name=RosBREEDSNP_SNP_AG_3730213_Lg9_00605_MAF50_MDP0000205248_exon4; organism=Malus x domestica; type=genetic_marker; length=75bp
GTCACCGGGTGGATGTGTCTGCAATTGATGTCAAC[A/G]ATGTTCCTCC
GAATGAATATCTGCATGGAGGAACT
Alignments
Feature NameTypeLocationAnalysis
MDC015493.467 contig MDC015493.467:5333..5333. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr09 chromosome Chr09:3959386..3959386. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation