RosBREEDSNP_SNP_TC_11533385_Lg3_02220_MAF30_10439_exon1, RosBREEDSNP_SNP_TC_11533385_Lg3_02220_MAF30_10439_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_TC_11533385_Lg3_02220_MAF30_10439_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_TC_11533385_Lg3_02220_MAF30_10439_exon1
50K SNP array for apple:	AX-105220592

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

ACCTGAAGGAGTGCAAAACAGAAAACGTGAGTGGG

3' Flanking Sequence

AAAAACAAAGTTTTTTAAAACCATTTCTCTTTCC

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC022194.423	contig	MDC022194.423:10251..10251 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr03	chromosome	Chr03:10872306..10872306 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr09	chromosome	Chr09:21415938..21415938 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	3	N/A	33.4	RosBREEDSNP_SNP_TC_11533385_Lg3_02220_MAF30_10439_exon1	View
2	Apple-M432-2013-physical-Malus-domestica	3	N/A	11533385	RosBREEDSNP_SNP_TC_11533385_Lg3_02220_MAF30_10439_exon1	View

Sequence

>RosBREEDSNP_SNP_TC_11533385_Lg3_02220_MAF30_10439_exon1 ID=RosBREEDSNP_SNP_TC_11533385_Lg3_02220_MAF30_10439_exon1; Name=RosBREEDSNP_SNP_TC_11533385_Lg3_02220_MAF30_10439_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
ACCTGAAGGAGTGCAAAACAGAAAACGTGAGTGGGYAAAAACAAAGTTTT
TTAAAACCATTTCTCTTTCC