|
|
Marker Overview
| Name | GDsnp01858 |
|---|
| dbSNP ID | ss475882920 |
|---|
| SNP Array ID | | 480K SNP array for apple: | AX-115181925 | | IRSC 9K SNP array for apple: | GDsnp01858 | | 20K SNP array for apple: | GDsnp01858 |
|
|---|
| Type | SNP |
|---|
| SNP Alleles | A/G |
|---|
| Probe 1 | GDsnp01858.probe: ATTTGGAGTGTTTTCTACAAGAAGTACATAACTGGTGTTTCTTACAAAAA |
|---|
| 5' Flanking Sequence | TTTTTTTAATCAATTTTTAGTAGAAATGCAAGAGTGAAACCTAAAAAAAAATTTGGAGTG
TTTTCTACAAGAAGTACATAACTGGTGTTTCTTACAAAAA |
|---|
| 3' Flanking Sequence | TGTTTCAAGTGTTTTTGGAAATCAAAAATATTTTCTCTAAAAATATTTTTGATCATTTTA
AAAGTACTTACAAATAAGACGTAACTTACTAGCTAGATAT |
|---|
| Species | Malus x domestica |
|---|
| Publication | [view all] |
|---|
| Contact | Michela Troggio
|
|---|
Alignments
The following features are aligned
Analyses
This genetic_marker is derived from or has results from the following analyses
Publications
| Year | Publication |
|---|
| 2010 | Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839. |
| 2014 | Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377. |
| 2012 | Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203. |
| 2016 | Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26. |
Sequence
>GDsnp01858 ID=GDsnp01858; Name=GDsnp01858; organism=Malus x domestica; type=genetic_marker; length=75bp
TACAAGAAGTACATAACTGGTGTTTCTTACAAAAA[A/G]TGTTTCAAGT
GTTTTTGGAAATCAAAAATATTTTC
|
