GWAS0001235 | GDR

Annotated Terms

Genome Location

GWAS Overview


GWAS Label	GWAS0001235 [ MapViewer ]
Published Symbol	procyanidin B2
Trait Name	procyanidin B2 content
Trait Alias	N/A
GWAS Marker	RosBREEDSNP_SNP_AG_7605137_Lg9_00893_MAF20_1636210_exon1
GWAS Study	Apple_phytochemicals_GWAS_Kumar_2022
Genome Assembly	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Statistical Mothod	MLM
Experimental Model	N/A
GWAS Panel	New_Zealand_apples_Hawke's_Bay_344
LOD	N/A
P Value	1.7E-8
R2	N/A
Unique key	3626-procyanidin B2RosBREEDSNP_SNP_AG_7605137_Lg9_00893_MAF20_1636210_exon1MLM
Comments	N/A

Annotated Terms

The following terms have been associated with this GWAS:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
MAIN:000201221	procyanidin B2 content

Genome Location


Name	Type	Location	Analysis	MapViewer
MDC016998.143	contig	MDC016998.143:2188..2188	Malus x domestica Whole Genome v1.0 Assembly & Annotation	View
Chr09	chromosome	Chr09:4882239..4882239	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	View
Chr09	chromosome	Chr09:8467383..8467383	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	View

Publications


Year	Publication
2022	Kumar S, Molloy C, Hunt M, Deng CH, Wiedow C, Andre C, Dare A, McGhie T. GWAS provides new insights into the genetic mechanisms of phytochemicals production and red skin colour in apple.. Horticulture research. 2022; 9:uhac218.

Germplasm


Stock Name	Type
New_Zealand_apples_Hawke's_Bay_344	panel