FxaC_24g12500.t1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of FxaC_24g12500.t1 vs. NCBI nr
Match: gi|764559398|ref|XP_011461027.1| (PREDICTED: uncharacterized protein LOC105350529 isoform X1 [Fragaria vesca subsp. vesca]) HSP 1 Score: 150.599 bits (379), Expect = 2.870e-38 Identity = 78/89 (87.64%), Postives = 80/89 (89.89%), Query Frame = 0
Query: 90 YEPPSFSLGLDFRFESELQTAHSPSSTPPLLADTDLDQVPEPQIEPPRALKRLKRGLPEKRELPTTPFWSVEDDIEEFSSPEDTVQGQL 178
YEPPSFSLGLDF FESELQTA P+STPP DTDLDQ PEPQIEPPRALKRLKRGLPEKRELPTTPFWSVEDDIEEFSSPEDTVQ +
Sbjct: 5 YEPPSFSLGLDFGFESELQTAPPPNSTPPRPVDTDLDQEPEPQIEPPRALKRLKRGLPEKRELPTTPFWSVEDDIEEFSSPEDTVQADV 93
BLAST of FxaC_24g12500.t1 vs. NCBI nr
Match: gi|764559401|ref|XP_011461028.1| (PREDICTED: uncharacterized protein LOC105350529 isoform X2 [Fragaria vesca subsp. vesca]) HSP 1 Score: 150.214 bits (378), Expect = 3.659e-38 Identity = 78/86 (90.70%), Postives = 79/86 (91.86%), Query Frame = 0
Query: 90 YEPPSFSLGLDFRFESELQTAHSPSSTPPLLADTDLDQVPEPQIEPPRALKRLKRGLPEKRELPTTPFWSVEDDIEEFSSPEDTVQ 175
YEPPSFSLGLDF FESELQTA P+STPP DTDLDQ PEPQIEPPRALKRLKRGLPEKRELPTTPFWSVEDDIEEFSSPEDTVQ
Sbjct: 5 YEPPSFSLGLDFGFESELQTAPPPNSTPPRPVDTDLDQEPEPQIEPPRALKRLKRGLPEKRELPTTPFWSVEDDIEEFSSPEDTVQ 90
BLAST of FxaC_24g12500.t1 vs. NCBI nr
Match: gi|1366009851|ref|XP_024157971.1| (uncharacterized protein LOC112165621 isoform X1 [Rosa chinensis]) HSP 1 Score: 139.428 bits (350), Expect = 4.363e-34 Identity = 67/93 (72.04%), Postives = 77/93 (82.80%), Query Frame = 0
Query: 86 IFSDYEPPSFSLGLDFRFESELQTAHSPSSTPPLLADTDLDQVPEPQIEPPRALKRLKRGLPEKRELPTTPFWSVEDDIEEFSSPEDTVQGQL 178
+ +DYEPPSFSLGLDF FESELQTA P S+PP DTD+D+ +IEPPR LKRLKRGLPEKRE PTTPFWS+EDDIEEFSSPEDT++ +
Sbjct: 1 MAADYEPPSFSLGLDFGFESELQTAAPPDSSPPRPVDTDVDR----EIEPPRELKRLKRGLPEKREPPTTPFWSIEDDIEEFSSPEDTIRADV 89
BLAST of FxaC_24g12500.t1 vs. NCBI nr
Match: gi|1366009853|ref|XP_024157972.1| (uncharacterized protein LOC112165621 isoform X2 [Rosa chinensis] >gi|1358157319|gb|PRQ31797.1| hypothetical protein RchiOBHm_Chr5g0039401 [Rosa chinensis]) HSP 1 Score: 139.043 bits (349), Expect = 5.390e-34 Identity = 67/90 (74.44%), Postives = 76/90 (84.44%), Query Frame = 0
Query: 86 IFSDYEPPSFSLGLDFRFESELQTAHSPSSTPPLLADTDLDQVPEPQIEPPRALKRLKRGLPEKRELPTTPFWSVEDDIEEFSSPEDTVQ 175
+ +DYEPPSFSLGLDF FESELQTA P S+PP DTD+D+ +IEPPR LKRLKRGLPEKRE PTTPFWS+EDDIEEFSSPEDT++
Sbjct: 1 MAADYEPPSFSLGLDFGFESELQTAAPPDSSPPRPVDTDVDR----EIEPPRELKRLKRGLPEKREPPTTPFWSIEDDIEEFSSPEDTIR 86
BLAST of FxaC_24g12500.t1 vs. NCBI nr
Match: gi|470132927|ref|XP_004302326.1| (PREDICTED: hydrophobic protein RCI2A [Fragaria vesca subsp. vesca]) HSP 1 Score: 113.62 bits (283), Expect = 1.149e-28 Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
MGAATC+DIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK
Sbjct: 1 MGAATCVDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 54
BLAST of FxaC_24g12500.t1 vs. NCBI nr
Match: gi|1150698849|ref|XP_020260275.1| (hydrophobic protein RCI2A [Asparagus officinalis]) HSP 1 Score: 101.679 bits (252), Expect = 4.230e-24 Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
MG ATCIDIIIAILLPPLGVFL+FGC VEFW+CL+LTL GYLPGIIYAI+AITK
Sbjct: 1 MGTATCIDIIIAILLPPLGVFLKFGCKVEFWLCLVLTLLGYLPGIIYAIYAITK 54
BLAST of FxaC_24g12500.t1 vs. NCBI nr
Match: gi|357511687|ref|XP_003626132.1| (low temperature and salt responsive family protein [Medicago truncatula] >gi|87241339|gb|ABD33197.1| Protein of unknown function UPF0057 [Medicago truncatula] >gi|355501147|gb|AES82350.1| low temperature and salt responsive family protein [Medicago truncatula] >gi|388497498|gb|AFK36815.1| unknown [Medicago truncatula]) HSP 1 Score: 101.293 bits (251), Expect = 7.740e-24 Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
MG ATCIDII+AI+LPPLGVFL+FGC VEFWICLILT+ GYLPGIIYAI+AITK
Sbjct: 1 MGTATCIDIILAIILPPLGVFLKFGCNVEFWICLILTILGYLPGIIYAIYAITK 54
BLAST of FxaC_24g12500.t1 vs. NCBI nr
Match: gi|297833312|ref|XP_002884538.1| (hydrophobic protein RCI2A [Arabidopsis lyrata subsp. lyrata] >gi|297330378|gb|EFH60797.1| predicted protein [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 100.908 bits (250), Expect = 9.668e-24 Identity = 44/54 (81.48%), Postives = 51/54 (94.44%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
MG ATC+DIIIAILLPPLGVFLRFGCGVEFWICL+LTL GY+PGI+YA++ +TK
Sbjct: 1 MGTATCVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGILYALYVLTK 54
BLAST of FxaC_24g12500.t1 vs. NCBI nr
Match: gi|502112982|ref|XP_004494505.1| (PREDICTED: hydrophobic protein LTI6B [Cicer arietinum]) HSP 1 Score: 100.523 bits (249), Expect = 1.314e-23 Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
MG ATC+DII+AI+LPPLGVFL+FGC VEFWICLILT+ GYLPGIIYAI+AITK
Sbjct: 1 MGTATCVDIILAIILPPLGVFLKFGCNVEFWICLILTILGYLPGIIYAIYAITK 54
BLAST of FxaC_24g12500.t1 vs. NCBI nr
Match: gi|589823914|gb|AHL20265.1| (stress-induced protein [Olea europaea]) HSP 1 Score: 100.523 bits (249), Expect = 1.452e-23 Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 0
Query: 244 GAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
G ATCIDII+AILLPPLGVFLR+GC VEFWICL+LT+ GYLPGIIYA++AITK
Sbjct: 5 GTATCIDIIVAILLPPLGVFLRYGCKVEFWICLLLTILGYLPGIIYAVYAITK 57
BLAST of FxaC_24g12500.t1 vs. ExPASy TrEMBL
Match: A0A2P6QC86_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0039401 PE=4 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 6.300e-34 Identity = 67/90 (74.44%), Postives = 76/90 (84.44%), Query Frame = 0
Query: 86 IFSDYEPPSFSLGLDFRFESELQTAHSPSSTPPLLADTDLDQVPEPQIEPPRALKRLKRGLPEKRELPTTPFWSVEDDIEEFSSPEDTVQ 175
+ +DYEPPSFSLGLDF FESELQTA P S+PP DTD+D+ +IEPPR LKRLKRGLPEKRE PTTPFWS+EDDIEEFSSPEDT++
Sbjct: 1 MAADYEPPSFSLGLDFGFESELQTAAPPDSSPPRPVDTDVDR----EIEPPRELKRLKRGLPEKREPPTTPFWSIEDDIEEFSSPEDTIR 86
BLAST of FxaC_24g12500.t1 vs. ExPASy TrEMBL
Match: Q2HRS6_MEDTR (Low temperature and salt responsive family protein OS=Medicago truncatula OX=3880 GN=11435303 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 9.046e-24 Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
MG ATCIDII+AI+LPPLGVFL+FGC VEFWICLILT+ GYLPGIIYAI+AITK
Sbjct: 1 MGTATCIDIILAIILPPLGVFLKFGCNVEFWICLILTILGYLPGIIYAIYAITK 54
BLAST of FxaC_24g12500.t1 vs. ExPASy TrEMBL
Match: D7L4P3_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_671374 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.130e-23 Identity = 44/54 (81.48%), Postives = 51/54 (94.44%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
MG ATC+DIIIAILLPPLGVFLRFGCGVEFWICL+LTL GY+PGI+YA++ +TK
Sbjct: 1 MGTATCVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGILYALYVLTK 54
BLAST of FxaC_24g12500.t1 vs. ExPASy TrEMBL
Match: A0A1S2XVY3_CICAR (hydrophobic protein LTI6B OS=Cicer arietinum OX=3827 GN=LOC101498482 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.536e-23 Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
MG ATC+DII+AI+LPPLGVFL+FGC VEFWICLILT+ GYLPGIIYAI+AITK
Sbjct: 1 MGTATCVDIILAIILPPLGVFLKFGCNVEFWICLILTILGYLPGIIYAIYAITK 54
BLAST of FxaC_24g12500.t1 vs. ExPASy TrEMBL
Match: W8NPZ2_OLEEU (Stress-induced protein OS=Olea europaea OX=4146 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.697e-23 Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 0
Query: 244 GAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
G ATCIDII+AILLPPLGVFLR+GC VEFWICL+LT+ GYLPGIIYA++AITK
Sbjct: 5 GTATCIDIIVAILLPPLGVFLRYGCKVEFWICLLLTILGYLPGIIYAVYAITK 57
BLAST of FxaC_24g12500.t1 vs. ExPASy TrEMBL
Match: A0A2Z6ZYQ9_9LAMI (Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_44257 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.899e-23 Identity = 44/54 (81.48%), Postives = 52/54 (96.30%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
MGAATCIDIIIA+LLPPLGVFL+FGCG EFWICL+LT+ GY+PGIIYA++A+TK
Sbjct: 1 MGAATCIDIIIAVLLPPLGVFLKFGCGHEFWICLLLTILGYIPGIIYAVYALTK 54
BLAST of FxaC_24g12500.t1 vs. ExPASy TrEMBL
Match: I3T9W2_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 5.082e-23 Identity = 44/54 (81.48%), Postives = 51/54 (94.44%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
MG ATC+DII+AI+LPPLGVFLRFGC VEFWICL+LT+ GY+PGIIYAI+AITK
Sbjct: 1 MGTATCVDIILAIILPPLGVFLRFGCKVEFWICLLLTILGYIPGIIYAIYAITK 54
BLAST of FxaC_24g12500.t1 vs. ExPASy TrEMBL
Match: B9N408_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G002100 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 9.220e-23 Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = 0
Query: 244 GAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
GA CIDI+IAI+LPPLGVFLRFGCGVEFWICL+LT+ GY+PGIIYA++AITK
Sbjct: 3 GAVKCIDILIAIILPPLGVFLRFGCGVEFWICLLLTILGYIPGIIYAVYAITK 55
BLAST of FxaC_24g12500.t1 vs. ExPASy TrEMBL
Match: A0A2P6R7Y6_ROSCH (Putative proteolipid membrane potential modulator OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0458631 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.000e-22 Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
M AT IDIIIAILLPPLGVFLRFGCGVEFWICLILTL GYLPGIIYAIWAITK
Sbjct: 1 MSTATFIDIIIAILLPPLGVFLRFGCGVEFWICLILTLFGYLPGIIYAIWAITK 54
BLAST of FxaC_24g12500.t1 vs. ExPASy TrEMBL
Match: Q5MJ27_CENAM (Low temperature and salt responsive protein OS=Cenchrus americanus OX=4543 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.143e-22 Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0
Query: 241 LSMGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
+S G A CIDII+AI+LPPLGVF +FGCGVEFWICL+LT GYLPGIIYA+WAITK
Sbjct: 1 MSDGTANCIDIILAIILPPLGVFFKFGCGVEFWICLVLTFFGYLPGIIYAVWAITK 56
BLAST of FxaC_24g12500.t1 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6B PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 8.928e-24 Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = 0
Query: 244 GAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
G A CIDI+IAI+LPPLGVFL+FGCG EFWICL+LT GY+PGIIYAI+AITK
Sbjct: 3 GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55
BLAST of FxaC_24g12500.t1 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica OX=39946 GN=LTI6B PE=3 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 8.928e-24 Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = 0
Query: 244 GAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
G A CIDI+IAI+LPPLGVFL+FGCG EFWICL+LT GY+PGIIYAI+AITK
Sbjct: 3 GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55
BLAST of FxaC_24g12500.t1 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 6.936e-23 Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
M AT +DIIIAILLPPLGVFLRFGCGVEFWICL+LTL GY+PGIIYAI+ +TK
Sbjct: 1 MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54
BLAST of FxaC_24g12500.t1 vs. ExPASy Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6A PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.466e-22 Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 0
Query: 246 ATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
ATCIDII+AI+LPPLGVF +FGCG+EFWICL+LT GYLPGIIYA+W ITK
Sbjct: 6 ATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56
BLAST of FxaC_24g12500.t1 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 7.015e-21 Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
M AT ++II+AI+LPPLGVFL+FGC VEFWICLILTL GYLPGI+YA++ ITK
Sbjct: 1 MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54
BLAST of FxaC_24g12500.t1 vs. ExPASy Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.560e-19 Identity = 33/52 (63.46%), Postives = 47/52 (90.38%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAI 294
MG+AT +++I+AI+LPP+GVFLR+ GVEFWICL+LT+ GY+PGIIYA++ +
Sbjct: 1 MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52
BLAST of FxaC_24g12500.t1 vs. ExPASy Swiss-Prot
Match: ESI3_ELYEL (Salt stress-induced hydrophobic peptide ESI3 OS=Elymus elongatus OX=4588 GN=ESI3 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.560e-19 Identity = 33/52 (63.46%), Postives = 47/52 (90.38%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAI 294
MG+AT +++I+AI+LPP+GVFLR+ GVEFWICL+LT+ GY+PGIIYA++ +
Sbjct: 1 MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52
BLAST of FxaC_24g12500.t1 vs. ExPASy Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 2.612e-18 Identity = 34/52 (65.38%), Postives = 46/52 (88.46%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAI 294
M +AT I++I+AI+LPP+GVFLR+G VEFWICL+LTL GY+PGIIYA++ +
Sbjct: 1 MASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVL 52
BLAST of FxaC_24g12500.t1 vs. ExPASy Swiss-Prot
Match: RC21_ARATH (UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana OX=3702 GN=At1g57550 PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 4.050e-13 Identity = 27/48 (56.25%), Postives = 42/48 (87.50%), Query Frame = 0
Query: 249 IDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
++++ AI +PP+GVFLR+G G+EFW+CL+LTL ++PG+IYAI+ +TK
Sbjct: 5 LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52
BLAST of FxaC_24g12500.t1 vs. ExPASy Swiss-Prot
Match: RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana OX=3702 GN=At2g24040 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 5.130e-13 Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0
Query: 248 CIDIIIAILLPPLGVFLRFGCG-VEFWICLILTLCGYLPGIIYAIWAIT 295
C +I IAILLPP+GV LR GC VEF+ICLILT GYLPGIIYAI+AI
Sbjct: 8 CCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAIC 56
BLAST of FxaC_24g12500.t1 vs. Araport11
Match: AT3G05880.1 (| Low temperature and salt responsive protein family | Chr3:1756195-1756494 REVERSE LENGTH=54 | 201606) HSP 1 Score: 92.0485 bits (227), Expect = 7.133e-24 Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
M AT +DIIIAILLPPLGVFLRFGCGVEFWICL+LTL GY+PGIIYAI+ +TK
Sbjct: 1 MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54
BLAST of FxaC_24g12500.t1 vs. Araport11
Match: AT2G38905.1 (| Low temperature and salt responsive protein family | Chr2:16244218-16244472 REVERSE LENGTH=54 | 201606) HSP 1 Score: 87.0409 bits (214), Expect = 5.730e-22 Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAI 294
MG+ T ++II+AILLPP+GVFLR+GCGVEFWICL+LT+ GY+PGIIYAI+ +
Sbjct: 1 MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 52
BLAST of FxaC_24g12500.t1 vs. Araport11
Match: AT3G05890.1 (| Low temperature and salt responsive protein family | Chr3:1758179-1758452 REVERSE LENGTH=54 | 201606) HSP 1 Score: 87.0409 bits (214), Expect = 7.214e-22 Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 0
Query: 243 MGAATCIDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
M AT ++II+AI+LPPLGVFL+FGC VEFWICLILTL GYLPGI+YA++ ITK
Sbjct: 1 MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54
BLAST of FxaC_24g12500.t1 vs. Araport11
Match: AT4G28088.1 (| Low temperature and salt responsive protein family | Chr4:13961244-13961560 REVERSE LENGTH=77 | 201606) HSP 1 Score: 70.0922 bits (170), Expect = 2.225e-15 Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 0
Query: 241 LSMGAATCIDIIIAILLPPLGVFLRFGC-GVEFWICLILTLCGYLPGIIYAIWAI 294
++ G C +I+IAIL+PPLGV LR GC EF ICLILTL GY+PGIIYA++AI
Sbjct: 1 MANGCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAI 55
BLAST of FxaC_24g12500.t1 vs. Araport11
Match: AT1G57550.1 (| Low temperature and salt responsive protein family | Chr1:21312541-21312809 REVERSE LENGTH=52 | 201606) HSP 1 Score: 65.855 bits (159), Expect = 4.165e-14 Identity = 27/48 (56.25%), Postives = 42/48 (87.50%), Query Frame = 0
Query: 249 IDIIIAILLPPLGVFLRFGCGVEFWICLILTLCGYLPGIIYAIWAITK 296
++++ AI +PP+GVFLR+G G+EFW+CL+LTL ++PG+IYAI+ +TK
Sbjct: 5 LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52
BLAST of FxaC_24g12500.t1 vs. Araport11
Match: AT2G24040.1 (| Low temperature and salt responsive protein family | Chr2:10224028-10224531 FORWARD LENGTH=75 | 201606) HSP 1 Score: 66.6254 bits (161), Expect = 5.276e-14 Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0
Query: 248 CIDIIIAILLPPLGVFLRFGCG-VEFWICLILTLCGYLPGIIYAIWAIT 295
C +I IAILLPP+GV LR GC VEF+ICLILT GYLPGIIYAI+AI
Sbjct: 8 CCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAIC 56
BLAST of FxaC_24g12500.t1 vs. Araport11
Match: AT4G30650.1 (| Low temperature and salt responsive protein family | Chr4:14954403-14954698 FORWARD LENGTH=73 | 201606) HSP 1 Score: 64.6994 bits (156), Expect = 2.224e-13 Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 0
Query: 250 DIIIAILLPPLGVFLRFGC-GVEFWICLILTLCGYLPGIIYAIWAI 294
+I+IAILLPPLGV L+ GC VEF ICL+LT+ GY+PGIIYA++ I
Sbjct: 10 EILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVI 55
BLAST of FxaC_24g12500.t1 vs. Araport11
Match: AT4G30660.2 (| Low temperature and salt responsive protein family | Chr4:14955470-14955944 FORWARD LENGTH=74 | 201606) HSP 1 Score: 64.6994 bits (156), Expect = 2.499e-13 Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0
Query: 250 DIIIAILLPPLGVFLRFGC-GVEFWICLILTLCGYLPGIIYAIWAI 294
+IIIAILLPPLGV R GC VEF ICL+LT+ GY+PGIIYAI+ I
Sbjct: 10 EIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVI 55
BLAST of FxaC_24g12500.t1 vs. Araport11
Match: AT4G30660.1 (| Low temperature and salt responsive protein family | Chr4:14955470-14955944 FORWARD LENGTH=74 | 201606) HSP 1 Score: 64.6994 bits (156), Expect = 2.499e-13 Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0
Query: 250 DIIIAILLPPLGVFLRFGC-GVEFWICLILTLCGYLPGIIYAIWAI 294
+IIIAILLPPLGV R GC VEF ICL+LT+ GY+PGIIYAI+ I
Sbjct: 10 EIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVI 55
BLAST of FxaC_24g12500.t1 vs. Araport11
Match: AT3G20490.1 (| Rho GTPase-activating protein | Chr3:7154178-7156382 REVERSE LENGTH=458 | 201606) HSP 1 Score: 53.5286 bits (127), Expect = 9.164e-8 Identity = 42/100 (42.00%), Postives = 54/100 (54.00%), Query Frame = 0
Query: 91 EPPSFSLGLDFRFESELQTA--HSPSST-PPLLAD-----------TDLDQVPEPQIEPPRALKRLKRGL-PEK---RELPTTPFWSVEDDIEEFSSPED 172
EPPSFSLG D S+LQ+ +PSST L+ D +D D+ EP P LKRL+RG+ P K ++ + +DDIEEFSSPED
Sbjct: 5 EPPSFSLGFDLDAASDLQSEIHQNPSSTGDQLIGDGDNEPELGLTVSDSDRELEPDFTSP-VLKRLRRGINPNKCSVKDDRSVAVEDRDDDIEEFSSPED 103 The following BLAST results are available for this feature:
BLAST of FxaC_24g12500.t1 vs. NCBI nr
Analysis Date: 2021-02-18 (Blastp of Fragaria x ananassa Camarosa v1.0.a2 proteins vs NCBI nr) Total hits: 10
BLAST of FxaC_24g12500.t1 vs. ExPASy TrEMBL
Analysis Date: 2021-03-01 (Blastp of Fragaria x ananassa Camarosa v1.0.a2 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of FxaC_24g12500.t1 vs. ExPASy Swiss-Prot
Analysis Date: 2021-03-01 (Blastp of Fragaria x ananassa Camarosa v1.0.a2 proteins vs UniProt Swissprot) Total hits: 10
BLAST of FxaC_24g12500.t1 vs. Araport11
Analysis Date: 2021-03-01 (Blastp of Fragaria x ananassa Camarosa v1.0.a2 proteins vs Araport11) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Fragaria x ananassa Camarosa v1.0.a2 proteins
Date Performed: 2021-02-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >FxaC_24g12500.t1_v1.a2 ID=FxaC_24g12500.t1_v1.a2; Name=FxaC_24g12500.t1; organism=Fragaria x ananassa; type=mRNA; length=1321bpback to top protein sequence of FxaC_24g12500.t1_v1.a2 >FxaC_24g12500.t1_v1.a2 ID=FxaC_24g12500.t1_v1.a2; Name=FxaC_24g12500.t1_v1.a2; organism=Fragaria x ananassa; type=polypeptide; length=297bpback to top mRNA from alignment at Fvb6-4:6100923..6103923- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>FxaC_24g12500.t1_v1.a2 ID=FxaC_24g12500.t1_v1.a2; Name=FxaC_24g12500.t1; organism=Fragaria x ananassa; type=mRNA; length=3001bp; location=Sequence derived from: Fvb6-4:6100923..6103923- (Fragaria x ananassaback to top Coding sequence (CDS) from alignment at Fvb6-4:6100923..6103923- >FxaC_24g12500.t1_v1.a2 ID=FxaC_24g12500.t1_v1.a2; Name=FxaC_24g12500.t1; organism=Fragaria x ananassa; type=CDS; length=891bp; location=Sequence derived from: Fvb6-4:6100923..6103923- (Fragaria x ananassaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|