GWAS0001505 | GDR

Annotated Terms

Genome Location

GWAS Overview


GWAS Label	GWAS0001505 [ MapViewer ]
Published Symbol	fruit stem end cracking
Trait Name	fruit cracking
Trait Alias	N/A
GWAS Marker	pav_Stn_chr1_26464729
GWAS Study	Sweet_cherry_fruit_quality_GWAS_Satonishiki_Donkpegan_2023
Genome Assembly	Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)
Statistical Mothod	FarmCPU
Experimental Model	N/A
GWAS Panel	Sweet_cherry_fruit_quality_GWAS_Donkpegan_2023
LOD	N/A
P Value	2.00e−07
R2	20.9
Unique key	3696-fruit stem end crackingpav_Stn_chr1_26464729FarmCPU
Effect	-0.01
Allele	C/A
Comments	N/A

Annotated Terms

The following terms have been associated with this GWAS:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
28:fruit cracking	fruit cracking

Genome Location


Name	Type	Location	Analysis	MapViewer
PAV_r1.0chr1	chromosome	PAV_r1.0chr1:26464729..26464729	Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)	View

Publications


Year	Publication
2023	Donkpegan ASL, Bernard A, Barreneche T, Quero-García J, Bonnet H, Fouché M, Le Dantec L, Wenden B, Dirlewanger E. Genome-wide association mapping in a sweet cherry germplasm collection (Prunus avium L.) reveals candidate genes for fruit quality traits.. Horticulture research. 2023 Oct; 10(10), uhad191.

Germplasm


Stock Name	Type
Sweet_cherry_fruit_quality_GWAS_Donkpegan_2023	panel