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Transcript Overview
| Name | COX1 |
|---|
| Unique Name | HQ731508.1-COX1.m1 |
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| Type | mRNA |
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| Organism | Rubus coreanus () |
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| Source | genbank |
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| Product | cytochrome oxidase subunit I |
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Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| HQ731508.1-COX1.m1-cds1 | HQ731508.1-COX1.m1-cds1 | Rubus coreanus | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| COX1 | HQ731508.1-COX1.p1 | Rubus coreanus | polypeptide |
Cross References
External references for this mRNA
Alignments
| Feature Name | Type | Location | Analysis |
|---|
| HQ731508 |
region |
HQ731508:18..1601+ |
NCBI Rosaceae gene and mRNA sequences |
Sequences
The
following sequences are available for this feature:
mRNA sequence >HQ731508.1-COX1.m1 ID=HQ731508.1-COX1.m1; Name=COX1; organism=Rubus coreanus; type=mRNA; length=1584bp
atgacaaatccggtccgatggctgttctccactaaccacaaggatatagg
gactctatatttcatcttcggtgccattgctggagtgatgggcacatgct
tctcagtactgattcgtatggaattagcacgacccggcgatcaaattctt
ggtgggaatcatcaactttataatgttttaataacggctcacgctttttt
aatgatcttttttatggttatgccggcgatgataggtggatttgggaatt
ggtttgttccgattctgataggtgcacctgacatggcatttccacgatta
aataatatttcattctggttgttgccaccaagtctcttgctcctattaag
ctcagccttagtagaagtgggtagcgggactgggtggacggtctatccgc
ccttaagtggtattaccagccattctggaggagctgttgatttagcaatt
tctagtcttcatctatctggtgtttcatccattttaggttctatcaattt
tataacaactatcttcaacatgcgtggacctggaatgactatgcatagat
tacccctatttgtgtggtccgttctagtgacagcattcctacttttatta
tcacttcccgtactggcaggggcaattaccatgttattaaccgatcgaaa
ctttaatacaaccttttttgatcccgctggggggggagaccccatgttat
accagcatctcttttggtttttcggtcatccagaggtgtatattcccatt
ctgcctggatccggtatcataagtcatatcgtttcgactttttcgggaaa
accggtcttcgggtatctaggcatggtttatgccatgatcagtataggtg
ttcttggatttcttgtttgggctcatcatatgtttactgtgggcttagac
gttgatacccgtgcctactttaccgcagctaccatgatcatagctgtccc
cactggaatcaaaatctttagttggatcgctaccatgtgggggggttcga
tacaatacaaaacacccatgttatttgctgtagggttcatctttttgttc
accataggaggactcactggaatagtcctggcaaattctgggctagacat
tgctctacatgatacttattatgtggttgcacatttccattatgtacttt
ctatgggagccgtttttgctttatttgcaggatttcactattgggttgga
aaaatctttggtcggacataccctgaaactttaggtcaaatccatttttg
gatcacttttttcggggttaatctgaccttctttcccatgcatttcttag
ggctttcgggtatgccacgtcgcattccagattatccagatgcttacgct
ggatggaatgcccttagcagttttggctcttatatatccgtagttgggat
tcgtcgtttcttcgtggtcgtaacaatcacttcaagcagtggaaataaca
aaagatgtgctccaagtccttgggctgttgaacagaattcaaccacactg
gaatggatggtacaaagtcctccagcttttcatacttttggagaacttcc
tgctatcaaggagacgaaaagctatgtgaagtaa back to topprotein sequence of COX1 >HQ731508.1-COX1.p1 ID=HQ731508.1-COX1.p1; Name=COX1; organism=Rubus coreanus; type=polypeptide; length=527bp
MTNPVRWLFSTNHKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQIL
GGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRL
NNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAI
SSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLL
SLPVLAGAITMLLTDRNFNTTFFDPAGGGDPMLYQHLFWFFGHPEVYIPI
LPGSGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLD
VDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLF
TIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAVFALFAGFHYWVG
KIFGRTYPETLGQIHFWITFFGVNLTFFPMHFLGLSGMPRRIPDYPDAYA
GWNALSSFGSYISVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTL
EWMVQSPPAFHTFGELPAIKETKSYVK back to topmRNA from alignment at HQ731508:18..1601+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >HQ731508.1-COX1.m1 ID=HQ731508.1-COX1.m1; Name=COX1; organism=Rubus coreanus; type=mRNA; length=1584bp; location=Sequence derived from: HQ731508:18..1601+ (Rubus coreanus
atgacaaatccggtccgatggctgttctccactaaccacaaggatatagg
gactctatatttcatcttcggtgccattgctggagtgatgggcacatgct
tctcagtactgattcgtatggaattagcacgacccggcgatcaaattctt
ggtgggaatcatcaactttataatgttttaataacggctcacgctttttt
aatgatcttttttatggttatgccggcgatgataggtggatttgggaatt
ggtttgttccgattctgataggtgcacctgacatggcatttccacgatta
aataatatttcattctggttgttgccaccaagtctcttgctcctattaag
ctcagccttagtagaagtgggtagcgggactgggtggacggtctatccgc
ccttaagtggtattaccagccattctggaggagctgttgatttagcaatt
tctagtcttcatctatctggtgtttcatccattttaggttctatcaattt
tataacaactatcttcaacatgcgtggacctggaatgactatgcatagat
tacccctatttgtgtggtccgttctagtgacagcattcctacttttatta
tcacttcccgtactggcaggggcaattaccatgttattaaccgatcgaaa
ctttaatacaaccttttttgatcccgctggggggggagaccccatgttat
accagcatctcttttggtttttcggtcatccagaggtgtatattcccatt
ctgcctggatccggtatcataagtcatatcgtttcgactttttcgggaaa
accggtcttcgggtatctaggcatggtttatgccatgatcagtataggtg
ttcttggatttcttgtttgggctcatcatatgtttactgtgggcttagac
gttgatacccgtgcctactttaccgcagctaccatgatcatagctgtccc
cactggaatcaaaatctttagttggatcgctaccatgtgggggggttcga
tacaatacaaaacacccatgttatttgctgtagggttcatctttttgttc
accataggaggactcactggaatagtcctggcaaattctgggctagacat
tgctctacatgatacttattatgtggttgcacatttccattatgtacttt
ctatgggagccgtttttgctttatttgcaggatttcactattgggttgga
aaaatctttggtcggacataccctgaaactttaggtcaaatccatttttg
gatcacttttttcggggttaatctgaccttctttcccatgcatttcttag
ggctttcgggtatgccacgtcgcattccagattatccagatgcttacgct
ggatggaatgcccttagcagttttggctcttatatatccgtagttgggat
tcgtcgtttcttcgtggtcgtaacaatcacttcaagcagtggaaataaca
aaagatgtgctccaagtccttgggctgttgaacagaattcaaccacactg
gaatggatggtacaaagtcctccagcttttcatacttttggagaacttcc
tgctatcaaggagacgaaaagctatgtgaagtaa back to topCoding sequence (CDS) from alignment at HQ731508:18..1601+ >HQ731508.1-COX1.m1 ID=HQ731508.1-COX1.m1; Name=COX1; organism=Rubus coreanus; type=CDS; length=1584bp; location=Sequence derived from: HQ731508:18..1601+ (Rubus coreanus
atgacaaatccggtccgatggctgttctccactaaccacaaggatatagg
gactctatatttcatcttcggtgccattgctggagtgatgggcacatgct
tctcagtactgattcgtatggaattagcacgacccggcgatcaaattctt
ggtgggaatcatcaactttataatgttttaataacggctcacgctttttt
aatgatcttttttatggttatgccggcgatgataggtggatttgggaatt
ggtttgttccgattctgataggtgcacctgacatggcatttccacgatta
aataatatttcattctggttgttgccaccaagtctcttgctcctattaag
ctcagccttagtagaagtgggtagcgggactgggtggacggtctatccgc
ccttaagtggtattaccagccattctggaggagctgttgatttagcaatt
tctagtcttcatctatctggtgtttcatccattttaggttctatcaattt
tataacaactatcttcaacatgcgtggacctggaatgactatgcatagat
tacccctatttgtgtggtccgttctagtgacagcattcctacttttatta
tcacttcccgtactggcaggggcaattaccatgttattaaccgatcgaaa
ctttaatacaaccttttttgatcccgctggggggggagaccccatgttat
accagcatctcttttggtttttcggtcatccagaggtgtatattcccatt
ctgcctggatccggtatcataagtcatatcgtttcgactttttcgggaaa
accggtcttcgggtatctaggcatggtttatgccatgatcagtataggtg
ttcttggatttcttgtttgggctcatcatatgtttactgtgggcttagac
gttgatacccgtgcctactttaccgcagctaccatgatcatagctgtccc
cactggaatcaaaatctttagttggatcgctaccatgtgggggggttcga
tacaatacaaaacacccatgttatttgctgtagggttcatctttttgttc
accataggaggactcactggaatagtcctggcaaattctgggctagacat
tgctctacatgatacttattatgtggttgcacatttccattatgtacttt
ctatgggagccgtttttgctttatttgcaggatttcactattgggttgga
aaaatctttggtcggacataccctgaaactttaggtcaaatccatttttg
gatcacttttttcggggttaatctgaccttctttcccatgcatttcttag
ggctttcgggtatgccacgtcgcattccagattatccagatgcttacgct
ggatggaatgcccttagcagttttggctcttatatatccgtagttgggat
tcgtcgtttcttcgtggtcgtaacaatcacttcaagcagtggaaataaca
aaagatgtgctccaagtccttgggctgttgaacagaattcaaccacactg
gaatggatggtacaaagtcctccagcttttcatacttttggagaacttcc
tgctatcaaggagacgaaaagctatgtgaagtaa back to top
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