PME1, AB067681.1-PME1.m1 (mRNA) Pyrus communis

Transcript Overview


Name	PME1
Unique Name	AB067681.1-PME1.m1
Type	mRNA
Organism	Pyrus communis (European Pear)
Source	genbank
Product	pectin methylesterase 1

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
AB067681.1-PME1.m1-cds1	AB067681.1-PME1.m1-cds1	Pyrus communis	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
PME1	AB067681.1-PME1.p1	Pyrus communis	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	119507461
nuccore	AB067681.1

Alignments

Feature Name	Type	Location	Analysis
AB067681	region	AB067681:89..1942+	NCBI Rosaceae gene and mRNA sequences
scaffold00037	supercontig	scaffold00037:74541..79452-	Pyrus communis Genome v1.0 Draft Assembly & Annotation

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at AB067681:89..1942+
coding sequence from alignment at AB067681:89..1942+

mRNA sequence

>AB067681.1-PME1.m1 ID=AB067681.1-PME1.m1; Name=PME1; organism=Pyrus communis; type=mRNA; length=1854bp
atggaatacggcagactccaaccatcggagccaggaggctcctccaagca
ccacgtggcggaaaacccatcactcccacaaaccgccacgtcatccacct
cctcaaccagccgcagccgcaagaacaagctcatcctaatctctctcctc
tccgtcgcactcatactcgcgtccgccgtctccgcagtcgtcctattcgc
cggccgctccaaagcttcaaactccgctgcctcctccgccctccaccgca
agcccacgaaggccatctcagacgcgtgcgccacgacccgcttcccctcc
ctctgcgtcgactccctactggacttccccggctccaccaccgcgtcgga
gcaggacctcgtccacatttccttcaacatgacgctgcagcgcctcagca
aggcgctctacctctcctcctccctctcctaccgccagatggatccctac
tcccgctccgcctacgatgactgcctcgagctcctcgacgactccgtcga
cgccctctcccgtgccctcacctccgtcatccccggcgcagcgtccacgt
ccacgtccacgtccacacaggacgtgctgacgtggctgagcgcagcgctc
acgaaccaggacacgtgcggggagggttttgagcaaatcaatggcggcga
cgtcaagaacgagatggaccagcggctcaaggacttgtcggaactcgtga
gcaactgcctcgcaatttactcggcgatcgggggcggcgatttctccgga
gtcccgatacagaacaggcggaggaggttgttgggtaattccgacatgga
gcgcgatataatgggggataatgccaatgtctcgcgagattttccgaggt
ggttgggtaggagggagaggaggttgctggcggtgccgggatcgcagata
caggcggatattatcgtgtcgaaagatggcagtgggacgttcaagacgat
cgcggaggcgatcaaaaaggcgccggagtctagttctcgtcggacaatta
tttacgtcaaagcaggaaggtacgaagagagtaatttgaaggtggcgagg
aagaagaccaacttgatgttcatcggagacgggaagggcaaaaccataat
taccggagggaaaaacgtcgcgcagaaagtgaccacattccacactgcaa
ctttcgctgctcaaggagctggctttattgcacgtgacctaacgttcgag
aactacgccggaccggacaagcaccaagccgtcgccctccgaataggagc
ggaccacgctgtggtctaccactgcagcatcatcggataccaagacacat
tttacgtgcactcgaatcgccaattcgtccgtgaaacggatatttacggg
acagtggatttcatttttggcaatgcggctgtagtgttccaaaagtgtag
cctctacgctcgcaagcccatggcgaatcaaaaaaacacgatcacagccc
aaaaccggaaggacccgaatcagaacacaggcatttctatccatgattgc
cggatcctcgccactccggagctcgagggttcaaagggtagcttcccgac
gtatctaggccgtccgtggaagttgtactctaggacagtttacatgttat
cgttcattggtgatcacgttcatccgcgtggatggcttgagtggaatggg
aatttcgccctagataccctctactatggtgaatacatgaactctggccc
tggcgcggcggtagggcaacgagtaacttggcctgggtatcgggttatta
cctctccggtggaggccggtaagttcactgttgcacagtttatatatggg
tcgtcatggttgccgtccaccggggtggcattcttggccggtttatcagt
ctaa

protein sequence of PME1

>AB067681.1-PME1.p1 ID=AB067681.1-PME1.p1; Name=PME1; organism=Pyrus communis; type=polypeptide; length=617bp
MEYGRLQPSEPGGSSKHHVAENPSLPQTATSSTSSTSRSRKNKLILISLL
SVALILASAVSAVVLFAGRSKASNSAASSALHRKPTKAISDACATTRFPS
LCVDSLLDFPGSTTASEQDLVHISFNMTLQRLSKALYLSSSLSYRQMDPY
SRSAYDDCLELLDDSVDALSRALTSVIPGAASTSTSTSTQDVLTWLSAAL
TNQDTCGEGFEQINGGDVKNEMDQRLKDLSELVSNCLAIYSAIGGGDFSG
VPIQNRRRRLLGNSDMERDIMGDNANVSRDFPRWLGRRERRLLAVPGSQI
QADIIVSKDGSGTFKTIAEAIKKAPESSSRRTIIYVKAGRYEESNLKVAR
KKTNLMFIGDGKGKTIITGGKNVAQKVTTFHTATFAAQGAGFIARDLTFE
NYAGPDKHQAVALRIGADHAVVYHCSIIGYQDTFYVHSNRQFVRETDIYG
TVDFIFGNAAVVFQKCSLYARKPMANQKNTITAQNRKDPNQNTGISIHDC
RILATPELEGSKGSFPTYLGRPWKLYSRTVYMLSFIGDHVHPRGWLEWNG
NFALDTLYYGEYMNSGPGAAVGQRVTWPGYRVITSPVEAGKFTVAQFIYG
SSWLPSTGVAFLAGLSV

mRNA from alignment at AB067681:89..1942+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>AB067681.1-PME1.m1 ID=AB067681.1-PME1.m1; Name=PME1; organism=Pyrus communis; type=mRNA; length=1854bp; location=Sequence derived from: AB067681:89..1942+ (Pyrus communis
atggaatacggcagactccaaccatcggagccaggaggctcctccaagca
ccacgtggcggaaaacccatcactcccacaaaccgccacgtcatccacct
cctcaaccagccgcagccgcaagaacaagctcatcctaatctctctcctc
tccgtcgcactcatactcgcgtccgccgtctccgcagtcgtcctattcgc
cggccgctccaaagcttcaaactccgctgcctcctccgccctccaccgca
agcccacgaaggccatctcagacgcgtgcgccacgacccgcttcccctcc
ctctgcgtcgactccctactggacttccccggctccaccaccgcgtcgga
gcaggacctcgtccacatttccttcaacatgacgctgcagcgcctcagca
aggcgctctacctctcctcctccctctcctaccgccagatggatccctac
tcccgctccgcctacgatgactgcctcgagctcctcgacgactccgtcga
cgccctctcccgtgccctcacctccgtcatccccggcgcagcgtccacgt
ccacgtccacgtccacacaggacgtgctgacgtggctgagcgcagcgctc
acgaaccaggacacgtgcggggagggttttgagcaaatcaatggcggcga
cgtcaagaacgagatggaccagcggctcaaggacttgtcggaactcgtga
gcaactgcctcgcaatttactcggcgatcgggggcggcgatttctccgga
gtcccgatacagaacaggcggaggaggttgttgggtaattccgacatgga
gcgcgatataatgggggataatgccaatgtctcgcgagattttccgaggt
ggttgggtaggagggagaggaggttgctggcggtgccgggatcgcagata
caggcggatattatcgtgtcgaaagatggcagtgggacgttcaagacgat
cgcggaggcgatcaaaaaggcgccggagtctagttctcgtcggacaatta
tttacgtcaaagcaggaaggtacgaagagagtaatttgaaggtggcgagg
aagaagaccaacttgatgttcatcggagacgggaagggcaaaaccataat
taccggagggaaaaacgtcgcgcagaaagtgaccacattccacactgcaa
ctttcgctgctcaaggagctggctttattgcacgtgacctaacgttcgag
aactacgccggaccggacaagcaccaagccgtcgccctccgaataggagc
ggaccacgctgtggtctaccactgcagcatcatcggataccaagacacat
tttacgtgcactcgaatcgccaattcgtccgtgaaacggatatttacggg
acagtggatttcatttttggcaatgcggctgtagtgttccaaaagtgtag
cctctacgctcgcaagcccatggcgaatcaaaaaaacacgatcacagccc
aaaaccggaaggacccgaatcagaacacaggcatttctatccatgattgc
cggatcctcgccactccggagctcgagggttcaaagggtagcttcccgac
gtatctaggccgtccgtggaagttgtactctaggacagtttacatgttat
cgttcattggtgatcacgttcatccgcgtggatggcttgagtggaatggg
aatttcgccctagataccctctactatggtgaatacatgaactctggccc
tggcgcggcggtagggcaacgagtaacttggcctgggtatcgggttatta
cctctccggtggaggccggtaagttcactgttgcacagtttatatatggg
tcgtcatggttgccgtccaccggggtggcattcttggccggtttatcagt
ctaa

Coding sequence (CDS) from alignment at AB067681:89..1942+

>AB067681.1-PME1.m1 ID=AB067681.1-PME1.m1; Name=PME1; organism=Pyrus communis; type=CDS; length=1854bp; location=Sequence derived from: AB067681:89..1942+ (Pyrus communis
atggaatacggcagactccaaccatcggagccaggaggctcctccaagca
ccacgtggcggaaaacccatcactcccacaaaccgccacgtcatccacct
cctcaaccagccgcagccgcaagaacaagctcatcctaatctctctcctc
tccgtcgcactcatactcgcgtccgccgtctccgcagtcgtcctattcgc
cggccgctccaaagcttcaaactccgctgcctcctccgccctccaccgca
agcccacgaaggccatctcagacgcgtgcgccacgacccgcttcccctcc
ctctgcgtcgactccctactggacttccccggctccaccaccgcgtcgga
gcaggacctcgtccacatttccttcaacatgacgctgcagcgcctcagca
aggcgctctacctctcctcctccctctcctaccgccagatggatccctac
tcccgctccgcctacgatgactgcctcgagctcctcgacgactccgtcga
cgccctctcccgtgccctcacctccgtcatccccggcgcagcgtccacgt
ccacgtccacgtccacacaggacgtgctgacgtggctgagcgcagcgctc
acgaaccaggacacgtgcggggagggttttgagcaaatcaatggcggcga
cgtcaagaacgagatggaccagcggctcaaggacttgtcggaactcgtga
gcaactgcctcgcaatttactcggcgatcgggggcggcgatttctccgga
gtcccgatacagaacaggcggaggaggttgttgggtaattccgacatgga
gcgcgatataatgggggataatgccaatgtctcgcgagattttccgaggt
ggttgggtaggagggagaggaggttgctggcggtgccgggatcgcagata
caggcggatattatcgtgtcgaaagatggcagtgggacgttcaagacgat
cgcggaggcgatcaaaaaggcgccggagtctagttctcgtcggacaatta
tttacgtcaaagcaggaaggtacgaagagagtaatttgaaggtggcgagg
aagaagaccaacttgatgttcatcggagacgggaagggcaaaaccataat
taccggagggaaaaacgtcgcgcagaaagtgaccacattccacactgcaa
ctttcgctgctcaaggagctggctttattgcacgtgacctaacgttcgag
aactacgccggaccggacaagcaccaagccgtcgccctccgaataggagc
ggaccacgctgtggtctaccactgcagcatcatcggataccaagacacat
tttacgtgcactcgaatcgccaattcgtccgtgaaacggatatttacggg
acagtggatttcatttttggcaatgcggctgtagtgttccaaaagtgtag
cctctacgctcgcaagcccatggcgaatcaaaaaaacacgatcacagccc
aaaaccggaaggacccgaatcagaacacaggcatttctatccatgattgc
cggatcctcgccactccggagctcgagggttcaaagggtagcttcccgac
gtatctaggccgtccgtggaagttgtactctaggacagtttacatgttat
cgttcattggtgatcacgttcatccgcgtggatggcttgagtggaatggg
aatttcgccctagataccctctactatggtgaatacatgaactctggccc
tggcgcggcggtagggcaacgagtaacttggcctgggtatcgggttatta
cctctccggtggaggccggtaagttcactgttgcacagtttatatatggg
tcgtcatggttgccgtccaccggggtggcattcttggccggtttatcagt
ctaa