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Transcript Overview
Name | PME1 |
Unique Name | AB067681.1-PME1.m1 |
Type | mRNA |
Organism | Pyrus communis (European Pear) |
Source | genbank |
Product | pectin methylesterase 1 |
Alignments
The following features are aligned
Feature Name | Type | Location | Analysis | Reference |
AB067681 | region | AB067681:89..1942 + | NCBI Rosaceae gene and mRNA sequences | n/a |
scaffold00037 | supercontig | PME1:1..1854 . scaffold00037:74541..79452 - | | n/a |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
AB067681.1-PME1.m1-cds1 | AB067681.1-PME1.m1-cds1 | Pyrus communis | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
PME1 | AB067681.1-PME1.p1 | Pyrus communis | polypeptide |
Cross References
External references for this mRNA
Sequences
The
following sequences are available for this feature:
mRNA sequence >AB067681.1-PME1.m1 ID=AB067681.1-PME1.m1; Name=PME1; organism=Pyrus communis; type=mRNA; length=1854bp atggaatacggcagactccaaccatcggagccaggaggctcctccaagca ccacgtggcggaaaacccatcactcccacaaaccgccacgtcatccacct cctcaaccagccgcagccgcaagaacaagctcatcctaatctctctcctc tccgtcgcactcatactcgcgtccgccgtctccgcagtcgtcctattcgc cggccgctccaaagcttcaaactccgctgcctcctccgccctccaccgca agcccacgaaggccatctcagacgcgtgcgccacgacccgcttcccctcc ctctgcgtcgactccctactggacttccccggctccaccaccgcgtcgga gcaggacctcgtccacatttccttcaacatgacgctgcagcgcctcagca aggcgctctacctctcctcctccctctcctaccgccagatggatccctac tcccgctccgcctacgatgactgcctcgagctcctcgacgactccgtcga cgccctctcccgtgccctcacctccgtcatccccggcgcagcgtccacgt ccacgtccacgtccacacaggacgtgctgacgtggctgagcgcagcgctc acgaaccaggacacgtgcggggagggttttgagcaaatcaatggcggcga cgtcaagaacgagatggaccagcggctcaaggacttgtcggaactcgtga gcaactgcctcgcaatttactcggcgatcgggggcggcgatttctccgga gtcccgatacagaacaggcggaggaggttgttgggtaattccgacatgga gcgcgatataatgggggataatgccaatgtctcgcgagattttccgaggt ggttgggtaggagggagaggaggttgctggcggtgccgggatcgcagata caggcggatattatcgtgtcgaaagatggcagtgggacgttcaagacgat cgcggaggcgatcaaaaaggcgccggagtctagttctcgtcggacaatta tttacgtcaaagcaggaaggtacgaagagagtaatttgaaggtggcgagg aagaagaccaacttgatgttcatcggagacgggaagggcaaaaccataat taccggagggaaaaacgtcgcgcagaaagtgaccacattccacactgcaa ctttcgctgctcaaggagctggctttattgcacgtgacctaacgttcgag aactacgccggaccggacaagcaccaagccgtcgccctccgaataggagc ggaccacgctgtggtctaccactgcagcatcatcggataccaagacacat tttacgtgcactcgaatcgccaattcgtccgtgaaacggatatttacggg acagtggatttcatttttggcaatgcggctgtagtgttccaaaagtgtag cctctacgctcgcaagcccatggcgaatcaaaaaaacacgatcacagccc aaaaccggaaggacccgaatcagaacacaggcatttctatccatgattgc cggatcctcgccactccggagctcgagggttcaaagggtagcttcccgac gtatctaggccgtccgtggaagttgtactctaggacagtttacatgttat cgttcattggtgatcacgttcatccgcgtggatggcttgagtggaatggg aatttcgccctagataccctctactatggtgaatacatgaactctggccc tggcgcggcggtagggcaacgagtaacttggcctgggtatcgggttatta cctctccggtggaggccggtaagttcactgttgcacagtttatatatggg tcgtcatggttgccgtccaccggggtggcattcttggccggtttatcagt ctaa back to topprotein sequence of PME1 >AB067681.1-PME1.p1 ID=AB067681.1-PME1.p1; Name=PME1; organism=Pyrus communis; type=polypeptide; length=617bp MEYGRLQPSEPGGSSKHHVAENPSLPQTATSSTSSTSRSRKNKLILISLL SVALILASAVSAVVLFAGRSKASNSAASSALHRKPTKAISDACATTRFPS LCVDSLLDFPGSTTASEQDLVHISFNMTLQRLSKALYLSSSLSYRQMDPY SRSAYDDCLELLDDSVDALSRALTSVIPGAASTSTSTSTQDVLTWLSAAL TNQDTCGEGFEQINGGDVKNEMDQRLKDLSELVSNCLAIYSAIGGGDFSG VPIQNRRRRLLGNSDMERDIMGDNANVSRDFPRWLGRRERRLLAVPGSQI QADIIVSKDGSGTFKTIAEAIKKAPESSSRRTIIYVKAGRYEESNLKVAR KKTNLMFIGDGKGKTIITGGKNVAQKVTTFHTATFAAQGAGFIARDLTFE NYAGPDKHQAVALRIGADHAVVYHCSIIGYQDTFYVHSNRQFVRETDIYG TVDFIFGNAAVVFQKCSLYARKPMANQKNTITAQNRKDPNQNTGISIHDC RILATPELEGSKGSFPTYLGRPWKLYSRTVYMLSFIGDHVHPRGWLEWNG NFALDTLYYGEYMNSGPGAAVGQRVTWPGYRVITSPVEAGKFTVAQFIYG SSWLPSTGVAFLAGLSV back to topmRNA from alignment at AB067681:89..1942+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >AB067681.1-PME1.m1 ID=AB067681.1-PME1.m1; Name=PME1; organism=Pyrus communis; type=mRNA; length=1854bp; location=Sequence derived from: AB067681:89..1942+ (Pyrus communis atggaatacggcagactccaaccatcggagccaggaggctcctccaagca
ccacgtggcggaaaacccatcactcccacaaaccgccacgtcatccacct
cctcaaccagccgcagccgcaagaacaagctcatcctaatctctctcctc
tccgtcgcactcatactcgcgtccgccgtctccgcagtcgtcctattcgc
cggccgctccaaagcttcaaactccgctgcctcctccgccctccaccgca
agcccacgaaggccatctcagacgcgtgcgccacgacccgcttcccctcc
ctctgcgtcgactccctactggacttccccggctccaccaccgcgtcgga
gcaggacctcgtccacatttccttcaacatgacgctgcagcgcctcagca
aggcgctctacctctcctcctccctctcctaccgccagatggatccctac
tcccgctccgcctacgatgactgcctcgagctcctcgacgactccgtcga
cgccctctcccgtgccctcacctccgtcatccccggcgcagcgtccacgt
ccacgtccacgtccacacaggacgtgctgacgtggctgagcgcagcgctc
acgaaccaggacacgtgcggggagggttttgagcaaatcaatggcggcga
cgtcaagaacgagatggaccagcggctcaaggacttgtcggaactcgtga
gcaactgcctcgcaatttactcggcgatcgggggcggcgatttctccgga
gtcccgatacagaacaggcggaggaggttgttgggtaattccgacatgga
gcgcgatataatgggggataatgccaatgtctcgcgagattttccgaggt
ggttgggtaggagggagaggaggttgctggcggtgccgggatcgcagata
caggcggatattatcgtgtcgaaagatggcagtgggacgttcaagacgat
cgcggaggcgatcaaaaaggcgccggagtctagttctcgtcggacaatta
tttacgtcaaagcaggaaggtacgaagagagtaatttgaaggtggcgagg
aagaagaccaacttgatgttcatcggagacgggaagggcaaaaccataat
taccggagggaaaaacgtcgcgcagaaagtgaccacattccacactgcaa
ctttcgctgctcaaggagctggctttattgcacgtgacctaacgttcgag
aactacgccggaccggacaagcaccaagccgtcgccctccgaataggagc
ggaccacgctgtggtctaccactgcagcatcatcggataccaagacacat
tttacgtgcactcgaatcgccaattcgtccgtgaaacggatatttacggg
acagtggatttcatttttggcaatgcggctgtagtgttccaaaagtgtag
cctctacgctcgcaagcccatggcgaatcaaaaaaacacgatcacagccc
aaaaccggaaggacccgaatcagaacacaggcatttctatccatgattgc
cggatcctcgccactccggagctcgagggttcaaagggtagcttcccgac
gtatctaggccgtccgtggaagttgtactctaggacagtttacatgttat
cgttcattggtgatcacgttcatccgcgtggatggcttgagtggaatggg
aatttcgccctagataccctctactatggtgaatacatgaactctggccc
tggcgcggcggtagggcaacgagtaacttggcctgggtatcgggttatta
cctctccggtggaggccggtaagttcactgttgcacagtttatatatggg
tcgtcatggttgccgtccaccggggtggcattcttggccggtttatcagt
ctaa back to topCoding sequence (CDS) from alignment at AB067681:89..1942+ >AB067681.1-PME1.m1 ID=AB067681.1-PME1.m1; Name=PME1; organism=Pyrus communis; type=CDS; length=1854bp; location=Sequence derived from: AB067681:89..1942+ (Pyrus communis atggaatacggcagactccaaccatcggagccaggaggctcctccaagca ccacgtggcggaaaacccatcactcccacaaaccgccacgtcatccacct cctcaaccagccgcagccgcaagaacaagctcatcctaatctctctcctc tccgtcgcactcatactcgcgtccgccgtctccgcagtcgtcctattcgc cggccgctccaaagcttcaaactccgctgcctcctccgccctccaccgca agcccacgaaggccatctcagacgcgtgcgccacgacccgcttcccctcc ctctgcgtcgactccctactggacttccccggctccaccaccgcgtcgga gcaggacctcgtccacatttccttcaacatgacgctgcagcgcctcagca aggcgctctacctctcctcctccctctcctaccgccagatggatccctac tcccgctccgcctacgatgactgcctcgagctcctcgacgactccgtcga cgccctctcccgtgccctcacctccgtcatccccggcgcagcgtccacgt ccacgtccacgtccacacaggacgtgctgacgtggctgagcgcagcgctc acgaaccaggacacgtgcggggagggttttgagcaaatcaatggcggcga cgtcaagaacgagatggaccagcggctcaaggacttgtcggaactcgtga gcaactgcctcgcaatttactcggcgatcgggggcggcgatttctccgga gtcccgatacagaacaggcggaggaggttgttgggtaattccgacatgga gcgcgatataatgggggataatgccaatgtctcgcgagattttccgaggt ggttgggtaggagggagaggaggttgctggcggtgccgggatcgcagata caggcggatattatcgtgtcgaaagatggcagtgggacgttcaagacgat cgcggaggcgatcaaaaaggcgccggagtctagttctcgtcggacaatta tttacgtcaaagcaggaaggtacgaagagagtaatttgaaggtggcgagg aagaagaccaacttgatgttcatcggagacgggaagggcaaaaccataat taccggagggaaaaacgtcgcgcagaaagtgaccacattccacactgcaa ctttcgctgctcaaggagctggctttattgcacgtgacctaacgttcgag aactacgccggaccggacaagcaccaagccgtcgccctccgaataggagc ggaccacgctgtggtctaccactgcagcatcatcggataccaagacacat tttacgtgcactcgaatcgccaattcgtccgtgaaacggatatttacggg acagtggatttcatttttggcaatgcggctgtagtgttccaaaagtgtag cctctacgctcgcaagcccatggcgaatcaaaaaaacacgatcacagccc aaaaccggaaggacccgaatcagaacacaggcatttctatccatgattgc cggatcctcgccactccggagctcgagggttcaaagggtagcttcccgac gtatctaggccgtccgtggaagttgtactctaggacagtttacatgttat cgttcattggtgatcacgttcatccgcgtggatggcttgagtggaatggg aatttcgccctagataccctctactatggtgaatacatgaactctggccc tggcgcggcggtagggcaacgagtaacttggcctgggtatcgggttatta cctctccggtggaggccggtaagttcactgttgcacagtttatatatggg tcgtcatggttgccgtccaccggggtggcattcttggccggtttatcagt ctaa back to top
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