Hi09f01, Hi09f01 (genetic_marker) Malus x domestica | GDR

Marker Overview

Marker Overview


Name	Hi09f01
Genbank ID	N/A
Type	SSR
Species	Malus x domestica
Repeat Motif	AAG
PCR Condition	annealing temp 60 degree
Primer 1	Hi09f01.primer 1: CACCACCAAATTCTCCATCTTC
Primer 2	Hi09f01.primer 2: GTTTACCGCCAAATGCTTTGTTAC
Product Length	257-266
Polymorphism	P_ Hi09f01
Publication	[view all]
Contact	A. Patocchi Miyuki Kunihisa

Contact

Name

Details

A. Patocchi

First name:	Andrea
Last name:	Patocchi
Institution:	Agroscope Changins-W?denswil Research Station ACW
Address:	Standort W?denswil Schloss Postfach 185 8820 W?denswil
Country:	SWITZERLAND
Email:	andrea.patocchi@acw.admin.ch
Phone:	+41 44 783 6313
Fax:	+41 (0)44 783 63 05

Miyuki Kunihisa

First name:	Miyuki
Last name:	Kunihisa
Institution:	NARO Institute of Fruit Tree Science
Address:	2-1 Fujimoto, Tsukuba, Ibaraki 305-8605
Country:	Japan
Email:	miyuky@affrc.go.jp
Phone:	81-29-838-6437
Keywords:	fruit drop

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr15	chromosome	Chr15:44516308..44516557 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	GDR marker alignment to genome using primer sequences
chr15A	chromosome	chr15A:44782901..44783159 .	Malus x domestica ‘Honeycrisp’ Genome v1.1.a1 Assembly & Annotation	GDR marker alignment to genome using primer sequences

Publications


Year	Publication
2006	Silfverberg-Dilworth E, Matasci CL, Van de Weg WE, Van Kaauwen MPW, Walser M, Kodde LP, Soglio V, Gianfranceschi L, Durel CE, Costa F, Yamamoto T, Koller B, Gessler C Patocchi A. Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genetics and Genomes. 2006; 2(4):202-224.
2014	Kunihisa M, Moriya S, Abe K, Okada K, Haji T, Hayashi T, Kim H, Nishitani C, Terakami S, Yamamoto T. Identification of QTLs for fruit quality traits in Japanese apples: QTLs for early ripening are tightly related to preharvest fruit drop. Breeding science. 2014 Sep; 64(3):240-51.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-C16xC17-F1-2012	15	N/A	94.48	Hi09f01	View
2	Apple-OA-F1-Orin	OR15	N/A	82.7	Hi09f01	View
3	Apple-OA-F1-Akane	AK15	N/A	86.3	Hi09f01	View
4	Apple-GDxJ-F1-2012	LG15	N/A	46.2	Hi09f01	View
5	Apple-JGD-F1-2014	J15	N/A	48.1	Hi09f01	View
6	Apple-JGD-F1-2014	G15	N/A	21.5	Hi09f01	View
7	Pear-Ba-F1-2013	Ba15	N/A	57	Hi09f01	View
8	Pear-BD-F1-2015	LG15	N/A	68.7	Hi09f01	View
9	Pear-Bayuehong-F1-2015	LG15	N/A	68.74	Hi09f01	View
10	Pear-Dangshansuli-F1-2015	LG15	N/A	72.68	Hi09f01	View
11	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	180.69	Hi09f01	View
12	Pear-Rcf-F1-female	LG15	N/A	16.22	Hi09f01	View
13	Pear-M-F1-male	LG15	N/A	24.12	Hi09f01	View
14	Pear-RM-F1-Integrated	LG15	N/A	20.48	Hi09f01	View