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Marker Overview
| Name | s5_15733705 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s5_15733705 |
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| Type | SNP |
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| SNP Alleles | A/G |
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| 5' Flanking Sequence | TTTAGAAAATGCTAACTGAAGCTGCAAAAGCAACATGGAAGAAAAAGAAATTATCATGAA
AAATCTAACTGCTGGAGCTAGTGGGGTAAAAATAAAAGTCAGTCTTAATAAGCCCTTTTT
TTCCTTTCATTTTTGCAGAAACCTACTTGC |
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| 3' Flanking Sequence | GAAAGTTTACAGCTGCAATACCCATTAGAAAAGGTTTGCCGCAACAAATTCCACTCATAC
TATCACGCAAGTCCAATAGTGAAGAGTTTTATTACCTTGCGGCCAACCAAGTCAAAACTC
ACAACTACTTTACTTCGTTTCGCCCGCTCA |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
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Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s5_15733705 ID=s5_15733705; Name=s5_15733705; organism=Prunus avium; type=genetic_marker; length=301bp
TTTAGAAAATGCTAACTGAAGCTGCAAAAGCAACATGGAAGAAAAAGAAA
TTATCATGAAAAATCTAACTGCTGGAGCTAGTGGGGTAAAAATAAAAGTC
AGTCTTAATAAGCCCTTTTTTTCCTTTCATTTTTGCAGAAACCTACTTGC
RGAAAGTTTACAGCTGCAATACCCATTAGAAAAGGTTTGCCGCAACAAAT
TCCACTCATACTATCACGCAAGTCCAATAGTGAAGAGTTTTATTACCTTG
CGGCCAACCAAGTCAAAACTCACAACTACTTTACTTCGTTTCGCCCGCTC
A
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