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Marker Overview
| Name | s5_4211398 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s5_4211398 |
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| Type | SNP |
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| SNP Alleles | T/G |
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| 5' Flanking Sequence | GAATGCCAAAGCCTTATCCGGCTCATTGAGCAGCCAAGCTGAAGCATCCTGTTATCACAC
ATAAATTGTTTCTTAATTGCTTGTTATGCCATGTACTGTGTACATTTAGGGTTCAGGTAT
ATGGTGGCTTAATTAGGTACAAACCATAAG |
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| 3' Flanking Sequence | AGTCCATGTTGTAACAAAACAGGCAGCTTAGCTGCTGTCTTGTTACCGGACCGACCAGCT
GGAATCCTTTGCAAGCCAAGGACATAACCATCTGCTGTTGTTACCTTAAACCCACCAAAA
GTTACATGAAAAAAGATACAACAAAGTTTA |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
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Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s5_4211398 ID=s5_4211398; Name=s5_4211398; organism=Prunus avium; type=genetic_marker; length=301bp
GAATGCCAAAGCCTTATCCGGCTCATTGAGCAGCCAAGCTGAAGCATCCT
GTTATCACACATAAATTGTTTCTTAATTGCTTGTTATGCCATGTACTGTG
TACATTTAGGGTTCAGGTATATGGTGGCTTAATTAGGTACAAACCATAAG
KAGTCCATGTTGTAACAAAACAGGCAGCTTAGCTGCTGTCTTGTTACCGG
ACCGACCAGCTGGAATCCTTTGCAAGCCAAGGACATAACCATCTGCTGTT
GTTACCTTAAACCCACCAAAAGTTACATGAAAAAAGATACAACAAAGTTT
A
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