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Marker Overview
| Name | s7_21672951 |
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| dbSNP ID | N/A |
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| Type | SNP |
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| SNP Alleles | A/G |
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| 5' Flanking Sequence | CTTCTCTTCTTCGACTCCACAACATTAACCACCAAATTTTCAGAACAAAATCAATTTCCA
CTTTCCTTGTTCACTTTTTAGTTACAGTTACGGAACACACAGGTACGTACACAAAAATGG
CGAAACTCACACTCAGAGCTGAGAGCTCGT |
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| 3' Flanking Sequence | CTTATTTTCACCCACCACAAGCTCACAGTCGCAGCCCTCATCCTTCGTCTCCTCATTCCG
ACGACGTCGTTTGCTTTGCTTCCCTCCAAAGAATAAATTGGAATTCAGAGTTTTCTGCAG
CATTAAAGAGAAAGAAAGCATCAAAGAAAC |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s7_21672951 ID=s7_21672951; Name=s7_21672951; organism=Prunus avium; type=genetic_marker; length=301bp
CTTCTCTTCTTCGACTCCACAACATTAACCACCAAATTTTCAGAACAAAA
TCAATTTCCACTTTCCTTGTTCACTTTTTAGTTACAGTTACGGAACACAC
AGGTACGTACACAAAAATGGCGAAACTCACACTCAGAGCTGAGAGCTCGT
RCTTATTTTCACCCACCACAAGCTCACAGTCGCAGCCCTCATCCTTCGTC
TCCTCATTCCGACGACGTCGTTTGCTTTGCTTCCCTCCAAAGAATAAATT
GGAATTCAGAGTTTTCTGCAGCATTAAAGAGAAAGAAAGCATCAAAGAAA
C
Alignments
| Feature Name | Type | Location | Analysis |
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| Pp07 |
chromosome |
Pp07:21271469..21271469. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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