SAmsCO417416, SAmsCO417416 (genetic_marker) Malus x domestica | GDR

Marker Overview

Marker Overview


Name	SAmsCO417416
Genbank ID	N/A
Type	SSR
Species	Malus x domestica
Repeat Motif	(CT) 17
Primer 1	SAmsCO417416.Forward Primer: GACCTCAGTCCAAGTCTCC
Primer 2	SAmsCO417416.Reverse Primer: CTGAATCTCTGCCGGAAGG
Max Length	233
Publication	[view all]
Contact	Felicidad Fernandez-Fernandez

Contact

Name

Details

Felicidad Fernandez-Fernandez

First name:	Felicidad
Last name:	Fernandez-Fernandez
Title:	Researcher
Institution:	East Malling Research
Address:	East Malling Research (EMR), New Road, East Malling, Kent ME19 6BJ, UK
Country:	United Kingdoms
Email:	felicidad.fernandez@emr.ac.uk
Fax:	+44 1732 849067
Last update:	Mar 2006

Publications


Year	Publication
2012	Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2012	Fernández-Fernández F, Antanaviciute L, van Dyk MM, Tobutt KR, Evans KM, Rees DJG, Dunwell JM, Sargent DJ. A genetic linkage map of an apple rootstock progeny anchored to the Malus genome sequence. Tree genetics & genomes. 2012; 8(5):991-1002.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-MM-F1	12	N/A	33.2	SAmsCO417416	View
2	Apple-M432-2012	LG12	N/A	35.8	SAmsCO417416	View

Alignments

Feature Name	Type	Location	Analysis
Chr12	chromosome	Chr12:23730753..23731088.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr12A	chromosome	chr12A:22920834..22921170.	Malus x domestica ‘Honeycrisp’ Genome v1.1.a1 Assembly & Annotation