SAmsDR990622, SAmsDR990622 (genetic_marker) Malus x domestica | GDR

Marker Overview

Marker Overview


Name	SAmsDR990622
Genbank ID	N/A
Type	SSR
Species	Malus x domestica
Repeat Motif	(TTC) 8.7
Primer 1	SAmsDR990622.Forward Primer: GCCCAATGGCAGTCCTGG
Primer 2	SAmsDR990622.Reverse Primer: TAGCGATTTGCACCTGCTTG
Max Length	347
Publication	[view all]
Contact	Felicidad Fernandez-Fernandez

Contact

Name

Details

Felicidad Fernandez-Fernandez

First name:	Felicidad
Last name:	Fernandez-Fernandez
Title:	Researcher
Institution:	East Malling Research
Address:	East Malling Research (EMR), New Road, East Malling, Kent ME19 6BJ, UK
Country:	United Kingdoms
Email:	felicidad.fernandez@emr.ac.uk
Fax:	+44 1732 849067
Last update:	Mar 2006

Publications


Year	Publication
2012	Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2012	Fernández-Fernández F, Antanaviciute L, van Dyk MM, Tobutt KR, Evans KM, Rees DJG, Dunwell JM, Sargent DJ. A genetic linkage map of an apple rootstock progeny anchored to the Malus genome sequence. Tree genetics & genomes. 2012; 8(5):991-1002.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-MM-F1	15	N/A	87.1	SAmsDR990622	View
2	Apple-M432-2012	LG15	N/A	90.2	SAmsDR990622	View

Alignments

Feature Name	Type	Location	Analysis
Chr15	chromosome	Chr15:34528555..34528894.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr15A	chromosome	chr15A:33543396..33543735.	Malus x domestica ‘Honeycrisp’ Genome v1.1.a1 Assembly & Annotation