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Marker Overview
| Name | s1_17142692 |
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| dbSNP ID | N/A |
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| Type | SNP |
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| SNP Alleles | A/G |
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| 5' Flanking Sequence | ACGATCCAGTTCTGTCTAGTGCTTAGTCACGTCAGCGACGCAGTGTATGCGAATGAGACT
CCGATGGTCAATTTCTTGAAAGATGCCTTACAGCTGGCTGTAGTATTTATGAATGGGTGC
ACCATTATGTTTAATAGTGAACGCCTGTTT |
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| 3' Flanking Sequence | TTGAAATAAAAAAGATAAGTTTCATCGCCACCATCATAGTAGGTCTTCTTGATGGCAGCC
TATATTTCTTTTGCAGTACTAAACCGAATGAAACAACTCATCAAGTTAGGGGACATGGAG
TCGATTAACCACCCCTTGACTCGAAAGTTT |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s1_17142692 ID=s1_17142692; Name=s1_17142692; organism=Prunus avium; type=genetic_marker; length=301bp
ACGATCCAGTTCTGTCTAGTGCTTAGTCACGTCAGCGACGCAGTGTATGC
GAATGAGACTCCGATGGTCAATTTCTTGAAAGATGCCTTACAGCTGGCTG
TAGTATTTATGAATGGGTGCACCATTATGTTTAATAGTGAACGCCTGTTT
RTTGAAATAAAAAAGATAAGTTTCATCGCCACCATCATAGTAGGTCTTCT
TGATGGCAGCCTATATTTCTTTTGCAGTACTAAACCGAATGAAACAACTC
ATCAAGTTAGGGGACATGGAGTCGATTAACCACCCCTTGACTCGAAAGTT
T
Alignments
| Feature Name | Type | Location | Analysis |
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| Pp01 |
chromosome |
Pp01:18116696..18116696. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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