|
|
Marker Overview
| Name | s1_35064529 |
|---|
| dbSNP ID | N/A |
|---|
| Type | SNP |
|---|
| SNP Alleles | T/G |
|---|
| 5' Flanking Sequence | GACAATTGAGGACATTGCAGAATGTTTAAAGAAGATTCCACTGCATCCCAACATTGCCTC
TGCAATCAAATCAGCCCATGCTTTTGGGTAATTTCCTTTCCTTATAAACATCCTATGAAT
TGACAAAACAGAACAAATTATGCTATAATT |
|---|
| 3' Flanking Sequence | TTATGAAAAATTCTAATTGTAACACATGCAGGTGTGATCTGAGGGTGTTAAGTGCTGCAA
ATGAATTTTTCATAGACACAATATTGAAGCATCATGGGCTAATGGATTGTTTCTCAGAAA
TCAACACCAACCCAAGCATTATTGATGAAC |
|---|
| Species | Prunus avium |
|---|
| Publication | [view all] |
|---|
| Contact | Patricio Hinrichsen
Stijn Vanderzande
|
|---|
| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intragenic SNPs |
|---|
Publications
| Year | Publication |
|---|
| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s1_35064529 ID=s1_35064529; Name=s1_35064529; organism=Prunus avium; type=genetic_marker; length=301bp
GACAATTGAGGACATTGCAGAATGTTTAAAGAAGATTCCACTGCATCCCA
ACATTGCCTCTGCAATCAAATCAGCCCATGCTTTTGGGTAATTTCCTTTC
CTTATAAACATCCTATGAATTGACAAAACAGAACAAATTATGCTATAATT
KTTATGAAAAATTCTAATTGTAACACATGCAGGTGTGATCTGAGGGTGTT
AAGTGCTGCAAATGAATTTTTCATAGACACAATATTGAAGCATCATGGGC
TAATGGATTGTTTCTCAGAAATCAACACCAACCCAAGCATTATTGATGAA
C
Alignments
| Feature Name | Type | Location | Analysis |
|---|
| Pp01 |
chromosome |
Pp01:36037718..36037718. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
|
