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Marker Overview
| Name | s1_43785506 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s1_43785506 |
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| Type | SNP |
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| SNP Alleles | A/G |
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| 5' Flanking Sequence | GGAATCTCAGTGAGTTTGCCTGAATCACTTAGAAACAATTCTCTTATATTTGACATTTCT
GAAAAATCTGGCATTTTTTCCAATGCAATGCAGCCATCTGCTTGTAAGACTTTCAAATTT
GTTGGTAAATCTGGGATTGCACGAAGATTT |
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| 3' Flanking Sequence | TGCACTTATTTAAAGACAAATCATGAAGCTTTGAAAGACGACTGAAGCTTGGTAGGCTGC
AAAAATCATTTCCTGCAAGATTTAAACTTTCTAAGGAAATTAGGCTACCGAGATCCTTGG
GGACTGCACCAGCCCAGCCTACAAGAGATA |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intragenic SNPs |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s1_43785506 ID=s1_43785506; Name=s1_43785506; organism=Prunus avium; type=genetic_marker; length=301bp
GGAATCTCAGTGAGTTTGCCTGAATCACTTAGAAACAATTCTCTTATATT
TGACATTTCTGAAAAATCTGGCATTTTTTCCAATGCAATGCAGCCATCTG
CTTGTAAGACTTTCAAATTTGTTGGTAAATCTGGGATTGCACGAAGATTT
RTGCACTTATTTAAAGACAAATCATGAAGCTTTGAAAGACGACTGAAGCT
TGGTAGGCTGCAAAAATCATTTCCTGCAAGATTTAAACTTTCTAAGGAAA
TTAGGCTACCGAGATCCTTGGGGACTGCACCAGCCCAGCCTACAAGAGAT
A
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