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Marker Overview
Name | s3_407343 |
dbSNP ID | N/A |
SNP Array ID | Cherry 6+9K SNP array: | s3_407343 |
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Type | SNP |
SNP Alleles | T/C |
5' Flanking Sequence | AAAAGTGCAAGAGGGCCATAGTAGTAACTTCACACAAATAGTTGGGAAATAGAATTTGTT
ATTCTATTTCGGGTTGAAACGGTAAAAAGGGGCACGAGTCCCCGACCCGTTGAGCAGCAT
GCTTATAAGCGTCACTGGCTCCTTTCAGAC |
3' Flanking Sequence | CGTTTGATGAGCTGGGAAAAAGAATTGAATAGAAGAGAGTGAGAGCCTACGACGCTGCAT
TTTCCGATGGACATTTTCTCGGCGAGCCCTAGGTCGTTCAAGGTCCACAGGAAATCACAT
GCGGCTTTGAGACTCAAATCCTTCATTTCC |
Species | Prunus avium |
Publication | [view all] |
Contact | Patricio Hinrichsen Stijn Vanderzande
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Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
Publications
Year | Publication |
2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s3_407343 ID=s3_407343; Name=s3_407343; organism=Prunus avium; type=genetic_marker; length=301bp AAAAGTGCAAGAGGGCCATAGTAGTAACTTCACACAAATAGTTGGGAAAT AGAATTTGTTATTCTATTTCGGGTTGAAACGGTAAAAAGGGGCACGAGTC CCCGACCCGTTGAGCAGCATGCTTATAAGCGTCACTGGCTCCTTTCAGAC YCGTTTGATGAGCTGGGAAAAAGAATTGAATAGAAGAGAGTGAGAGCCTA CGACGCTGCATTTTCCGATGGACATTTTCTCGGCGAGCCCTAGGTCGTTC AAGGTCCACAGGAAATCACATGCGGCTTTGAGACTCAAATCCTTCATTTC C
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