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Marker Overview
| Name | s3_5631416 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s3_5631416 |
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| Type | SNP |
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| SNP Alleles | T/C |
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| 5' Flanking Sequence | CTGTTGCCGAAAATGTCCCTATAGCTTGCCTTCCTCTGCCCTGCAGTCAAAGGACATACA
TTTATGATAGTTCATATCCCAATTCCAAACCGGAAGAAGGTGTTTTTAAGGCTCAAAGAG
ACATACATTTACAAGCTGCTTGTGATCTTC |
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| 3' Flanking Sequence | TCATTGTCCGTATCCGAGGACCTTACAATCGGAACCGCGTTTAGCAAAGCTATCCGCATG
CACTTGATGGCATCAATGACCTTTGTGCGGTCAGTAATGGCGAAAACTCTCTCCGTGACA
GCTCCCAAATCCGATACCGTGCTCGATATG |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intragenic SNPs |
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Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s3_5631416 ID=s3_5631416; Name=s3_5631416; organism=Prunus avium; type=genetic_marker; length=301bp
CTGTTGCCGAAAATGTCCCTATAGCTTGCCTTCCTCTGCCCTGCAGTCAA
AGGACATACATTTATGATAGTTCATATCCCAATTCCAAACCGGAAGAAGG
TGTTTTTAAGGCTCAAAGAGACATACATTTACAAGCTGCTTGTGATCTTC
YTCATTGTCCGTATCCGAGGACCTTACAATCGGAACCGCGTTTAGCAAAG
CTATCCGCATGCACTTGATGGCATCAATGACCTTTGTGCGGTCAGTAATG
GCGAAAACTCTCTCCGTGACAGCTCCCAAATCCGATACCGTGCTCGATAT
G
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