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Marker Overview
Name | s4_18375803 |
dbSNP ID | N/A |
SNP Array ID | Cherry 6+9K SNP array: | s4_18375803 |
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Type | SNP |
SNP Alleles | T/C |
5' Flanking Sequence | CGCCCATTTGAAGACCGTAACATTATTGAGATGTGCAGCATAACAGCTTTGGCTCACTTG
AGAGCTGCGGTCTTGTTTTTCTTGGACATCTCGGGGTCTTGTGGGTACAGCATTGCCCAA
CAGGCAGCACTTTTTCACAGTATTAAGTCT |
3' Flanking Sequence | TGTTTATGAACAAACCATTGATTATAGTCTGCAACAAGACTGATTTGCAGCCACTGGAGG
GTATATCCGAGGAAGACAAGAAGTTGGTCACGGAGATGAAAGCTGAAGCTATGAAGACAG
TAATTGGTCAAGGAGGTGAGGCTACCAATG |
Species | Prunus avium |
Publication | [view all] |
Contact | Patricio Hinrichsen Stijn Vanderzande
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Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
Alignments
The following features are aligned
Publications
Year | Publication |
2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s4_18375803 ID=s4_18375803; Name=s4_18375803; organism=Prunus avium; type=genetic_marker; length=301bp CGCCCATTTGAAGACCGTAACATTATTGAGATGTGCAGCATAACAGCTTT GGCTCACTTGAGAGCTGCGGTCTTGTTTTTCTTGGACATCTCGGGGTCTT GTGGGTACAGCATTGCCCAACAGGCAGCACTTTTTCACAGTATTAAGTCT YTGTTTATGAACAAACCATTGATTATAGTCTGCAACAAGACTGATTTGCA GCCACTGGAGGGTATATCCGAGGAAGACAAGAAGTTGGTCACGGAGATGA AAGCTGAAGCTATGAAGACAGTAATTGGTCAAGGAGGTGAGGCTACCAAT G
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