|
|
Marker Overview
| Name | s4_19790956 |
|---|
| dbSNP ID | N/A |
|---|
| SNP Array ID | | Cherry 6+9K SNP array: | s4_19790956 |
|
|---|
| Type | SNP |
|---|
| SNP Alleles | T/G |
|---|
| 5' Flanking Sequence | GTAGGGGCCAGTTCACAATCATGATGGAAATAAATCTAGACAGATAAACTTACAGAATCA
GGTACATATCCAAGGGGATGTCCTTTCTGTCTTCTTCTTCTATTTCAGAAAGACGAAGAC
GAGCTTGTCTCAAATCGTTTGTGCAGCTAA |
|---|
| 3' Flanking Sequence | GGATCTGTCAGATGTTCCACAATGATTGGTTTTTCCCTCTACCTGCTTAGTGAGAAGAGA
TACAAGTCTCTGAAGATCTCTAGCTGCTTGTCCATAATCTCTGATCATCTCATATAATGT
AGCTCGCCTAGAAATAGCCTGTGAAAGTGT |
|---|
| Species | Prunus avium |
|---|
| Publication | [view all] |
|---|
| Contact | Patricio Hinrichsen
Stijn Vanderzande
|
|---|
| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
|---|
Alignments
The following features are aligned
Publications
| Year | Publication |
|---|
| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s4_19790956 ID=s4_19790956; Name=s4_19790956; organism=Prunus avium; type=genetic_marker; length=301bp
GTAGGGGCCAGTTCACAATCATGATGGAAATAAATCTAGACAGATAAACT
TACAGAATCAGGTACATATCCAAGGGGATGTCCTTTCTGTCTTCTTCTTC
TATTTCAGAAAGACGAAGACGAGCTTGTCTCAAATCGTTTGTGCAGCTAA
KGGATCTGTCAGATGTTCCACAATGATTGGTTTTTCCCTCTACCTGCTTA
GTGAGAAGAGATACAAGTCTCTGAAGATCTCTAGCTGCTTGTCCATAATC
TCTGATCATCTCATATAATGTAGCTCGCCTAGAAATAGCCTGTGAAAGTG
T
|
