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Marker Overview
| Name | s4_29756136 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s4_29756136 |
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| Type | SNP |
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| SNP Alleles | T/C |
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| 5' Flanking Sequence | CGCTCCTTGGACCTAAGCCCTCTGAACGAGCACCATGATTTTTTCTACTCCATTGCCAGT
GGCCACGCTTGCCCCCTCGCCCACGTTTGTGGATACTGCCACGAGATGAAGTGGCATTCA
CTTCCTGAGATGCAGCATTTATTTCAGGAA |
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| 3' Flanking Sequence | TGGTGCTGAGCCCGTTGGGCGAGATTGGTGATTCTTTAATAAAAGCTCATTATTCTGCTC
AGCTAACAAGAGGCAAGAGACAAGTTCCGAGTACTTCTTGAAACTGCTATGTCTGTATTG
CTGTTGAAGGAGGACATTTGAAGCATGAAA |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
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Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s4_29756136 ID=s4_29756136; Name=s4_29756136; organism=Prunus avium; type=genetic_marker; length=301bp
CGCTCCTTGGACCTAAGCCCTCTGAACGAGCACCATGATTTTTTCTACTC
CATTGCCAGTGGCCACGCTTGCCCCCTCGCCCACGTTTGTGGATACTGCC
ACGAGATGAAGTGGCATTCACTTCCTGAGATGCAGCATTTATTTCAGGAA
YTGGTGCTGAGCCCGTTGGGCGAGATTGGTGATTCTTTAATAAAAGCTCA
TTATTCTGCTCAGCTAACAAGAGGCAAGAGACAAGTTCCGAGTACTTCTT
GAAACTGCTATGTCTGTATTGCTGTTGAAGGAGGACATTTGAAGCATGAA
A
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