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Marker Overview
Name | s5_13376620 |
dbSNP ID | N/A |
SNP Array ID | Cherry 6+9K SNP array: | s5_13376620 |
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Type | SNP |
SNP Alleles | T/G |
5' Flanking Sequence | AATCTGGTAGTTGGAGTGTCAGAAGATGTCTACTTGGAACTTCTACTGTTTATTGCTGAT
AATTGGTGGCCCAAATTTCTCTGCACCAACATCAAGAACATACCACTGATAAAATATGTG
GATCTTGATGAGGATGTATCTTTGTGCAGC |
3' Flanking Sequence | TGAGCTCAATGCAGACTGGTAAAAAGAACGTTTGCCTATCCCGTCATTCTTGTCATGTCT
CATGGCTGATTGACTGGAACAGGGAATTTATATCTGCGGCAAGTCTTCTTTTTATGCCGA
AAAGAACCCAGGAAGCTATCCAGTTATGTT |
Species | Prunus avium |
Publication | [view all] |
Contact | Patricio Hinrichsen Stijn Vanderzande
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Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
Alignments
The following features are aligned
Publications
Year | Publication |
2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s5_13376620 ID=s5_13376620; Name=s5_13376620; organism=Prunus avium; type=genetic_marker; length=301bp AATCTGGTAGTTGGAGTGTCAGAAGATGTCTACTTGGAACTTCTACTGTT TATTGCTGATAATTGGTGGCCCAAATTTCTCTGCACCAACATCAAGAACA TACCACTGATAAAATATGTGGATCTTGATGAGGATGTATCTTTGTGCAGC KTGAGCTCAATGCAGACTGGTAAAAAGAACGTTTGCCTATCCCGTCATTC TTGTCATGTCTCATGGCTGATTGACTGGAACAGGGAATTTATATCTGCGG CAAGTCTTCTTTTTATGCCGAAAAGAACCCAGGAAGCTATCCAGTTATGT T
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