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Marker Overview
| Name | s6_25522796 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s6_25522796 |
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| Type | SNP |
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| SNP Alleles | T/G |
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| 5' Flanking Sequence | CCTAATCGTGGAGACAGAGAACCCGTGAGGCCTTTGTTGAATGAAAGGTCCCTGCAATGT
TAACGTTTCTACTTCGTTACAAAAAGGATGCCATGCTAATCAAAGATTGAGTGATAACAA
AATAATTGATGCTGCAAAAGAAATATGTTT |
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| 3' Flanking Sequence | ATGCATATGTTTACATACTGAATCTGTTGCATTGCATCTGGGTTCAATTCATAATGTGCT
GCAAACATAATGCTGGTACAAAGAGGAGCAATTATACTCACAAGGATCTTAATTCAGAGA
GTCCCCCGATATCGCCTTCAATATGTCCTT |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intragenic SNPs |
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Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s6_25522796 ID=s6_25522796; Name=s6_25522796; organism=Prunus avium; type=genetic_marker; length=301bp
CCTAATCGTGGAGACAGAGAACCCGTGAGGCCTTTGTTGAATGAAAGGTC
CCTGCAATGTTAACGTTTCTACTTCGTTACAAAAAGGATGCCATGCTAAT
CAAAGATTGAGTGATAACAAAATAATTGATGCTGCAAAAGAAATATGTTT
KATGCATATGTTTACATACTGAATCTGTTGCATTGCATCTGGGTTCAATT
CATAATGTGCTGCAAACATAATGCTGGTACAAAGAGGAGCAATTATACTC
ACAAGGATCTTAATTCAGAGAGTCCCCCGATATCGCCTTCAATATGTCCT
T
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