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Marker Overview
| Name | s8_323300 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s8_323300 |
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| Type | SNP |
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| SNP Alleles | T/C |
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| 5' Flanking Sequence | GCTACATAAACATTCCAAGTCATGAAGAGAAAAAGTTACGACCCAACAGACATTCATTCA
GGGACAATGGAGCACTGCACCTGGTAGTTCAACCACTGTTGTGCTGCAAGCAAACTTCTT
CTGTAGCTCTGATGCCAAAGCTTCAGGGTC |
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| 3' Flanking Sequence | ACCAAAAAAGTTTCCAGTCCTGACAATTTGGTTACTTTCTTATTACCTTGCCGCCTTTCT
GTCATTATTTGTATTGTTTTCAAACCACCTTTACGAACAACCGACTCACTTCCCCTCGTC
ACAACATGATGGGCTTGCATCCGGTTTACA |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s8_323300 ID=s8_323300; Name=s8_323300; organism=Prunus avium; type=genetic_marker; length=301bp
GCTACATAAACATTCCAAGTCATGAAGAGAAAAAGTTACGACCCAACAGA
CATTCATTCAGGGACAATGGAGCACTGCACCTGGTAGTTCAACCACTGTT
GTGCTGCAAGCAAACTTCTTCTGTAGCTCTGATGCCAAAGCTTCAGGGTC
YACCAAAAAAGTTTCCAGTCCTGACAATTTGGTTACTTTCTTATTACCTT
GCCGCCTTTCTGTCATTATTTGTATTGTTTTCAAACCACCTTTACGAACA
ACCGACTCACTTCCCCTCGTCACAACATGATGGGCTTGCATCCGGTTTAC
A
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