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Marker Overview
| Name | s8_1338472 |
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| dbSNP ID | N/A |
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| Type | SNP |
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| SNP Alleles | A/G |
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| 5' Flanking Sequence | ATATTATAGAACTCCCTGCGCAAAGTCTGTAGCTTGATTGTTATGGCCTTGCTGTCACCT
TGAAACTCCTTTTCTAATGTATCCCAGGCTTCTTTTGCTGTTTTAGCTCTTGTAATTCTT
GGAAAAATGTCTGAAGTGACTCCGTTCTGA |
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| 3' Flanking Sequence | TCTTGGAGAGAGCCTTGGCATCTTTCATGACTTCTGCTTCGAACTTCTCTATTTCTGCTG
CTGGAAGCTGACTTAGATCCTCTGGTTCTTGAAGCCCTCTTTCAACGAAGCTCCAAAGAC
CTTCTGACAACAGTATAGTTCTCATCTTCA |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s8_1338472 ID=s8_1338472; Name=s8_1338472; organism=Prunus avium; type=genetic_marker; length=301bp
ATATTATAGAACTCCCTGCGCAAAGTCTGTAGCTTGATTGTTATGGCCTT
GCTGTCACCTTGAAACTCCTTTTCTAATGTATCCCAGGCTTCTTTTGCTG
TTTTAGCTCTTGTAATTCTTGGAAAAATGTCTGAAGTGACTCCGTTCTGA
RTCTTGGAGAGAGCCTTGGCATCTTTCATGACTTCTGCTTCGAACTTCTC
TATTTCTGCTGCTGGAAGCTGACTTAGATCCTCTGGTTCTTGAAGCCCTC
TTTCAACGAAGCTCCAAAGACCTTCTGACAACAGTATAGTTCTCATCTTC
A
Alignments
| Feature Name | Type | Location | Analysis |
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| Pp08 |
chromosome |
Pp08:1338376..1338376. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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