|
|
Marker Overview
| Name | s8_13612599 |
|---|
| dbSNP ID | N/A |
|---|
| Type | SNP |
|---|
| SNP Alleles | T/C |
|---|
| 5' Flanking Sequence | AGCCGGTATGATTGGTAGGCTCTGCTCGGGTCGTCGGATCATGGGTCATGGACGGTACTA
TGACTTCGAAGCATGGGTCGAGACAAAATGCTCATCGTGTCTAGATGGCAGACTCGACCC
TCCTCCGCCGCCTCTGGCTGCAGTCCCCGG |
|---|
| 3' Flanking Sequence | GAGAATGTTCTGGCGGCCGAGGCAGCAGACACATCACCAGAAATAAAGGAAGAAGAAGAG
CAACAACAACAGCAGCAGCAACAACAACATCATCAACAACAACAACAACAACAACATCAA
CATCAACTTCAACATCAGCAACATCAGCAA |
|---|
| Species | Prunus avium |
|---|
| Publication | [view all] |
|---|
| Contact | Patricio Hinrichsen
Stijn Vanderzande
|
|---|
| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
|---|
Publications
| Year | Publication |
|---|
| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s8_13612599 ID=s8_13612599; Name=s8_13612599; organism=Prunus avium; type=genetic_marker; length=301bp
AGCCGGTATGATTGGTAGGCTCTGCTCGGGTCGTCGGATCATGGGTCATG
GACGGTACTATGACTTCGAAGCATGGGTCGAGACAAAATGCTCATCGTGT
CTAGATGGCAGACTCGACCCTCCTCCGCCGCCTCTGGCTGCAGTCCCCGG
YGAGAATGTTCTGGCGGCCGAGGCAGCAGACACATCACCAGAAATAAAGG
AAGAAGAAGAGCAACAACAACAGCAGCAGCAACAACAACATCATCAACAA
CAACAACAACAACAACATCAACATCAACTTCAACATCAGCAACATCAGCA
A
Alignments
| Feature Name | Type | Location | Analysis |
|---|
| Pp08 |
chromosome |
Pp08:14357093..14357093. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
|
