AX-89865159, AX-89865159 (genetic_marker) Fragaria iinumae

Marker Overview
NameAX-89865159
dbSNP IDN/A
SNP Array ID
90K SNP array for cultivated strawberry:Affx-88812824
TypeSNP
SNP AllelesA/G
Probe 1AX-89865159.AX-89865159: ACCTGTTTCGTCAAAACGACAGTGTCCACG
5' Flanking SequenceGAAACCCTGAAGGAACTTGTGGATCATTTAAGGAA
3' Flanking SequenceGCACCTGTGACAGCAAAACTGCTTTGTCCATCCTT
SpeciesFragaria iinumae
Publication[view all]
ContactNahla Bassil
CommentF1D (SNP in F. iinumae F1D population)
Contact
NameDetails
Nahla Bassil
First name:Nahla
Last name:Bassil
Title:Geneticist
Institution:USDA-ARS, NCGR, Corvallis, OR, USA
Address:USDA-ARS, NCGR, Corvallis, OR, USA
Country:USA
Email:nahla.bassil@ars.usda.gov
Phone:(541) 738-4214
Libraries
Library NameType
90K SNP array for cultivated strawberrySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Fragaria-Fii1N/A42.85AX-89865159View
Sequence
>AX-89865159 ID=AX-89865159; Name=AX-89865159; organism=Fragaria iinumae; type=genetic_marker; length=71bp
GAAACCCTGAAGGAACTTGTGGATCATTTAAGGAARGCACCTGTGACAGC
AAAACTGCTTTGTCCATCCTT
Alignments
Feature NameTypeLocationAnalysis
Fvb1 chromosome Fvb1:4791507..4791577+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb1-4 chromosome Fvb1-4:4023487..4023557+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb1-4 chromosome Fvb1-4:16784859..16784928+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb1-3 chromosome Fvb1-3:4344412..4344482+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb1-2 chromosome Fvb1-2:6369532..6369602+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb1-2 chromosome Fvb1-2:6341926..6341996+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb1-2 chromosome Fvb1-2:296160..296230- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb1-1 chromosome Fvb1-1:23450454..23450524- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb1-1 chromosome Fvb1-1:23315109..23315179- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb1-1 chromosome Fvb1-1:9108787..9108856- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
LG1 chromosome LG1:6376332..6376332. Fragaria vesca Whole Genome v1.1 Assembly & Annotation